Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03310 ATGGATCAGGGAACCGCGGAACAAAAGTCAGTGACTATTAACCCAGGTATGACGTTAAAACAAGACAAACTAACAAAAGGGTCTCATTCAAAATTTGTAGCAAGGAAAAGAGGGGCACAGATAACATTTTTTCCTTCTCAAGATGGGATGGGATCAAAAGGCCCATGCTCATCCACAGGCAAGCTTAAAACCCAACATCATAGTTTGGTGTTAGAACAGTGCTGTGTGATGACTTCAGCTAAGAACGTGGCAAGCGCCGTTGGTGGCAAAACCGCGAGAGCTTGTGACAGCTGCATAACAAAGCGAGCTCGTTGGTACTGTGCTGCCGATGATGCTTTCCTTTGCCAAGCTTGTGATTCTTCTGTTCACTCAGCTAACTCATTGGCTCGTAGACATGAAAGAGTCCGTTTGAAAACGGCGTCGTACAGATCCACGACTTCTGATGAACTTAATCATGGTCCTTCATGGCACCATGGCTTCACCAAAAAAGCAAGAACACCGAGACATGGGAAACACTCAGTTTCTGTCACTCGTCAAACACCTAAGTCTTCCAGTAACGAGCCGGTGAGATACCCATTTCATCTGGTGCCAGAAGTCGGATTAGATGAAGTGAATTCTCATGATGAGAACGAGGAGCAACTCCTTTATAGGGTTCCCATATTCGAACCCTTTGTGGCTGAGCTATGTAGTCCTCCTTCTTCAGTGACTTCAACTGAAGGAGCAGCAGTAGCTGTGGCTTCTGCTCCTGAGGTTGATGACAAGGACAACAAAGAGAGCCAGAACAACAAAGTTTCGTTTGTTTCTAACAATCATGAGATGGAAAGCTTTCACGGGCTTCTTCCTTCTGATATTGAACTTGCTGAATTTGCAGCTGATGTTGAGAGCTTGTTGGGTAGGGGACTAGAAAACGAGTGCATAGGGATGGAAGAGTTGGGGCTTATTGATACCAAACAGGAGGAGGAGGAGTGGGAGTGTTCAGTGGGTAGTGGGAAGGTGACGATGGAAGGTGAAGAGAGTCCGCAAGTGGCTGCTTCCAAAGCCTGTAAGGTTGAGGAAGATCAGATGGAGATGGGAAGAGAATCTTCATTTGAGTTGAACTTTGATTATGACTCTCATGAAACATGTGAAGAGGTGAAGGAGAAGGTTGCTCTTGATATGGCCAAAGATGCAGGGAAGGAAGGTGAAGAACTGAAAGAAAATAATAACGCAAAAAGGAAGATATTGTTGCAGCTAGATTATGATGCAGTAATCATCGCTTGGGCTAGCCAAAAGTCTCCCTGGACTACTGGTGACAAACCAAATTTGGACACTGATGAGTGCTGGCCTGACTGCATGGGAACTTGTGGAACGGTGCTTCATCATTCTTATGGTGAATTGAGTGGATTTGGGTGTCATCCAGCAATGGCAGACGGGGGCAGAGAGGCAAGGGTGTCAAGGTACCGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCTGAGAAGAGACCCAGAATGAAAGGAAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCGACAGCATTTCCTTTGCTAAATAAATAA 1590 0.4566 MDQGTAEQKSVTINPGMTLKQDKLTKGSHSKFVARKRGAQITFFPSQDGMGSKGPCSSTGKLKTQHHSLVLEQCCVMTSAKNVASAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYRSTTSDELNHGPSWHHGFTKKARTPRHGKHSVSVTRQTPKSSSNEPVRYPFHLVPEVGLDEVNSHDENEEQLLYRVPIFEPFVAELCSPPSSVTSTEGAAVAVASAPEVDDKDNKESQNNKVSFVSNNHEMESFHGLLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKQEEEEWECSVGSGKVTMEGEESPQVAASKACKVEEDQMEMGRESSFELNFDYDSHETCEEVKEKVALDMAKDAGKEGEELKENNNAKRKILLQLDYDAVIIAWASQKSPWTTGDKPNLDTDECWPDCMGTCGTVLHHSYGELSGFGCHPAMADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTAFPLLNK* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03310 529 MobiDBLite consensus disorder prediction 158 172 - -
Rops6g03310 529 MobiDBLite consensus disorder prediction 142 189 - -
Rops6g03310 529 Pfam CCT motif 473 515 IPR010402 GO:0005515
Rops6g03310 529 SMART bboxneu5 90 137 IPR000315 GO:0008270
Rops6g03310 529 CDD Bbox1_BBX-like 94 137 - -
Rops6g03310 529 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 84 517 - -
Rops6g03310 529 MobiDBLite consensus disorder prediction 173 187 - -
Rops6g03310 529 ProSiteProfiles CCT domain profile. 473 515 IPR010402 GO:0005515
Rops6g03310 529 ProSiteProfiles Zinc finger B-box type profile. 90 137 IPR000315 GO:0008270
Rops6g03310 529 Pfam B-box zinc finger 92 135 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03310 Rops-Chr6 57448762 57451275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03310 81 520 C2C2-CO-like Transcription Factor Family AT1G68520 44.298 2.30e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops6g03310 zf-B_box 1.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03310 6 57448762 57451275 Rops6g03310 6 57448762 57451275 ECH