Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03306 ATGACTTTGTTGTTCCTTTACAGGAGACCAGAAGGAAACCCATTAGACCTTAACAATTTGCCTGATGAGTACTCTAGAGATGGTAAACAAGTCCTCGAAGATAGCTCCTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGTAAGGATGGAAAAGACGAGTGTGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAAAGGGAAACAGAGACTCTGAACCATGCTCGTCAGCTGGTTTTTCGTAATGATCAGAACCTTGCACAAGGTGCTCCTCACTTAGGATGCTGTCAACCAATAGCAGCAGGGGGCTATCATCCACCAAACAACTTGGGAGAGCCAACAGTGCCTCTGAGATTACCAAGATACTTCTCTGGTTCATCCTCAACCCACATCCCACCACAACCAACTCAACCTTATTTATATGCTTCACCTGCAAGGCCAGTGTCATTTCCCTCACACTTTCCTCAGCATCCGATGAATGATAATTACCATGTGGGTCATGTGATGAGTGGCAACCAGGCATATGGGCAGCACAATATGCACTATGTGGCAGGTGATTCTAGTTACACCTGCATTGGTGCACCGGTGGGACAAGGGTTTGGGAGGGGCATGGATGGTGGTAAGGACGGGTCACTGCACAATCAGGAGGAAGGGTTGAATTGGGGAAGGAGCTACTCAGGAGCACAGCATCGTTTGGATCCTCCTTCAGCGATCAATCGGTTTCAAGATGGTTTTTAA 789 0.4816 MTLLFLYRRPEGNPLDLNNLPDEYSRDGKQVLEDSSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDQNLAQGAPHLGCCQPIAAGGYHPPNNLGEPTVPLRLPRYFSGSSSTHIPPQPTQPYLYASPARPVSFPSHFPQHPMNDNYHVGHVMSGNQAYGQHNMHYVAGDSSYTCIGAPVGQGFGRGMDGGKDGSLHNQEEGLNWGRSYSGAQHRLDPPSAINRFQDGF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03306 262 PANTHER ZINC FINGER PROTEIN JAGGED 27 223 IPR045320 GO:0003700
Rops6g03306 262 MobiDBLite consensus disorder prediction 220 262 - -
Rops6g03306 262 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Rops6g03306 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Rops6g03306 262 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Rops6g03306 262 MobiDBLite consensus disorder prediction 9 52 - -
Rops6g03306 262 FunFam Zinc finger protein STAMENLESS 1 33 106 - -
Rops6g03306 262 MobiDBLite consensus disorder prediction 22 52 - -
Rops6g03306 262 Gene3D Classic Zinc Finger 35 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03306 Rops-Chr6 57291250 57293018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03306 8 216 C2H2 Transcription Factor Family AT1G13400 46.919 7.08e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g03306 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03306 6 57291250 57293018 Rops6g03306 6 57291250 57293018 ECH