Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03303 ATGAAACTTTCCTTTCTCTCACCCACTCACCCCCATTACCATCACCCCATCAAATTTCACCATTCTTCTTCACTCACTCTCTTCACTTCCTCCACCACTCGTAGCACCAGGCCACGTTGGCCTCGCATGGAAGGCGCCTCCTCCTCCTTCCACCGCCGGAAAGACAAGGTGGTAGTCATCATGGGCGCCACCGGCTCCGGAAAATCGCGCCTTTCCATCCAACTCGCCACTCTCTTCCCCTTCTCTGAAATCATCAACTCAGATAAAATGCAAGTATATAAAGGCCTCGACATCACCACAAACAAGATCCCTCACCACCAACGAAACGGCGTCGTTCACCACCTTCTCGGCGACGTCGACCCTTCCCACGGTGAGTTCTCTCCGTTAGACTTCCGCCGCCACGCCGCCGACATCATATCCGACATAACCCACCGTAAGAAGCTTCCCATCCTCGTTGGTGGGTCAAACTCCTTCGTTCACGCTCTTCTGGTAGAACGATTCGACCCCGAGTCGAACGTGTTCGATGACGAGTCACCGGTTGCTATATCCTCCGAGTTGAGGTACAAGGGTTGCTTCCTCTGGGTGCATATTTCGTTTCCAGTGTTGGAGGAATATTTGTTAAAACGAGTCGATGACATGCTTGACTCGGGAATGGTGGAAGAGTTGGCTCAGATTTTTGACCCTGACGCGTCACACGACCAAACTGGGTTGAGAAAAGCCATCGGGGTGCCCGAGTTCGACCGGTTTTTTAAAGATCAGGTGCGGGAGGGTGCCTACGAGGAAGCAGTGAGGGCTATTAAGGATAACACGTGTCAGCTTGCGAAGAGGCAGATAGGGAAGATCCTAAAATTAAAACGAGCAGGGTGGGACCTACGGAGGATTGACGCCACGGAGGCGTTTAAGGCGGTGCTGACTTCAGCGTCTCACGGCGGCGGAGAGGACTTCTCCGATATATGGAGGAGGCAGGTATTGGAACCAAGCGTGAAGATTGTGAAGCGGTTCTTGATGGAGTAG 1014 0.5286 MKLSFLSPTHPHYHHPIKFHHSSSLTLFTSSTTRSTRPRWPRMEGASSSFHRRKDKVVVIMGATGSGKSRLSIQLATLFPFSEIINSDKMQVYKGLDITTNKIPHHQRNGVVHHLLGDVDPSHGEFSPLDFRRHAADIISDITHRKKLPILVGGSNSFVHALLVERFDPESNVFDDESPVAISSELRYKGCFLWVHISFPVLEEYLLKRVDDMLDSGMVEELAQIFDPDASHDQTGLRKAIGVPEFDRFFKDQVREGAYEEAVRAIKDNTCQLAKRQIGKILKLKRAGWDLRRIDATEAFKAVLTSASHGGGEDFSDIWRRQVLEPSVKIVKRFLME* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03303 337 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 54 335 IPR039657 -
Rops6g03303 337 Gene3D - 54 335 IPR027417 -
Rops6g03303 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 232 IPR027417 -
Rops6g03303 337 Pfam IPP transferase 91 165 - -
Rops6g03303 337 Pfam IPP transferase 184 278 - -
Rops6g03303 337 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 199 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03303 Rops-Chr6 57189766 57190779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03303 187 335 C2H2 Transcription Factor Family AT2G27760 27.869 9.30e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03303 6 57189766 57190779 Rops6g03303 6 57189766 57190779 ECH