Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03290 ATGGACAACCAACCTGACTACAACACAAAAAGAACAAACCCCACTTCCCCAACGAGCTTAAAACTCTTTGGCTTCAGCGTCCATGAAGAAACCACAGAGGATGAGATGGTGCTTGAAGACATAGCAGACTCAACCACCAAGGCCACTTCCCCTTCCACTTCCCCATCTGGGTCGCCGGAATCCGGCGTAGGCGACGCCTTCCCTCCTTCCTCCGGTGACCGGAAATACGAGTGCCAGTACTGTTGCAGAGAGTTCGCAAATTCACAAGCACTTGGTGGGCACCAAAACGCACACAAGAAAGAGCGTCAACAACTCAAACGTGCACAGTTACAAGCCACACGAAACGCCGCCGTTTCGTTCGTTCGAAACCCCATCATCTCCGCCTTCGCCCCTCCGCCGCACCTGTTGGCTCCGCCGGGGTCAGTGATGGTCCCGGCGTCACAACCCTCGTGGGTCTACGTTCCGCCACGTGCAGCTCCTCCTCCGTTCCACGTGTCAGTATCACACGGTTGTGTGTTCCCGTCGGCGAACAGCAACAGCATGAGTAATAATAATATATTCACAACGGGTGTTAAATCTGCGGGTGCAGGGATGTTTCCCTATGTTGGCGTTGTAGGGGATTCGTCATCCGCATTGTCAACGATGCAGGTACAGGCCCGGGTCCACCACACTAGGATTGATGGGCCCTCTTTGAGTAGGTTCTCTAATGGGGATAGTGGGCCCAACTTTGATGATGCATTGGGCTTGGACTTGCACCTTAGTCTTGCGCCAGCTGCGCCGTGA 783 0.5441 MDNQPDYNTKRTNPTSPTSLKLFGFSVHEETTEDEMVLEDIADSTTKATSPSTSPSGSPESGVGDAFPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLAPPGSVMVPASQPSWVYVPPRAAPPPFHVSVSHGCVFPSANSNSMSNNNIFTTGVKSAGAGMFPYVGVVGDSSSALSTMQVQARVHHTRIDGPSLSRFSNGDSGPNFDDALGLDLHLSLAPAAP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03290 260 PANTHER ZINC FINGER PROTEIN 5 10 259 IPR044299 GO:0010090
Rops6g03290 260 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Rops6g03290 260 MobiDBLite consensus disorder prediction 1 22 - -
Rops6g03290 260 MobiDBLite consensus disorder prediction 1 70 - -
Rops6g03290 260 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Rops6g03290 260 FunFam Zinc finger protein GIS3 64 126 - -
Rops6g03290 260 Gene3D Classic Zinc Finger 67 123 - -
Rops6g03290 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Rops6g03290 260 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03290 Rops-Chr6 56994541 56995540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03290 6 259 C2H2 Transcription Factor Family AT1G68360 45.693 9.86e-58 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03290 6 56994541 56995540 Rops6g03290 6 56994541 56995540 ECH