Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03289 ATGGGGATGGGTTCGAAGATGGAAGGACCGTCTACCCCAGCAATTCGACGTGACCCTTATGAGGTATTGTCCGTTTCAAGAGAATCAACCGATCAAGAAATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCACCCTGACAAGAATGCCAGCAATCCTGAAGCTTCAGAACTGTTTAAAGAGGTTGCGTATTCTTACAATATCTTGTCTGACCCAGAGAAGAGAAGGCAGTATGATAGCGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGATTTATCTAATCTGGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTCGGTGTCCCTATCAAGACTACCATTTCAGCAAATGTTATTGAAGAAGCTCTGAATGGCACAGTTACAGTTAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAACGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACATCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACACGATGCAAATGGTGGCTATGGTTTGGCATTGCAGGAAGACAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTACTTCTTACATTTTCAAGTGTACAGAATGGATTCAACAGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCGGAGCTAAAGCCTGGAACTCATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACGATTGAGGCGGTATGTGCGAAATCATATGAAGATACCACAGAAAAACTTAAGGACGTCGAGGCTCAAATATTAAGAAAGAGGATTGAGCTACGTCAATTTGAATCAGAATATAGAAAGGCATTGGCGCGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGACGAGCTTCTGAAACAAAGGGACAGCATTCATTCTTCCTTCACCATTGTCAAGTCAAGCAATATCAGTGGCAGTGCTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGCTGAGAGCCCTGGAGAAGATGGAGGGTCAGATGGTAAGGATAAATCAAGCAAAAAGAAATGGTTTAACCTGAATCTCAAAGGTTCTGATAAGAAGTTGATTTAA 1245 0.4153 MGMGSKMEGPSTPAIRRDPYEVLSVSRESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVIEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTEKLKDVEAQILRKRIELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDSIHSSFTIVKSSNISGSASNLSNGSSSKISGEDSKAESPGEDGGSDGKDKSSKKKWFNLNLKGSDKKLI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03289 414 CDD DnaJ 18 72 IPR001623 -
Rops6g03289 414 PRINTS DnaJ domain signature 38 53 IPR001623 -
Rops6g03289 414 PRINTS DnaJ domain signature 55 75 IPR001623 -
Rops6g03289 414 PRINTS DnaJ domain signature 20 38 IPR001623 -
Rops6g03289 414 PRINTS DnaJ domain signature 75 94 IPR001623 -
Rops6g03289 414 Coils Coil 288 343 - -
Rops6g03289 414 MobiDBLite consensus disorder prediction 361 378 - -
Rops6g03289 414 Pfam DnaJ domain 18 80 IPR001623 -
Rops6g03289 414 SUPERFAMILY Chaperone J-domain 17 88 IPR036869 -
Rops6g03289 414 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 412 - -
Rops6g03289 414 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Rops6g03289 414 MobiDBLite consensus disorder prediction 379 399 - -
Rops6g03289 414 SMART dnaj_3 17 75 IPR001623 -
Rops6g03289 414 Gene3D DnaJ domain 5 100 IPR036869 -
Rops6g03289 414 MobiDBLite consensus disorder prediction 361 399 - -
Rops6g03289 414 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g03289 414 FunFam Chaperone protein dnaJ 16 3 100 - -
Rops6g03289 414 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03289 Rops-Chr6 56971728 56980645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03289 11 90 C2H2 Transcription Factor Family AT1G74250 43.529 2.37e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03289 6 56971728 56980645 Rops6g03289 6 56971728 56980645 ECH