Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03244 ATGGATTCAAACTCATCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGACAAACAGGATGATGGGATAATTGATCTGGGTCTTAGTCTTGGAACTGTTCAACATGAAGCTTATCATCCTTCTGGCAACTTGTATGATGATGACCTTATGGATTGGCCTCACTGTAATCTCAACCTCAAGAATTCAAGCACAACTCATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGACGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTCACCATTGGTAGGAAAATTTGTGTTCTTGATCATGGGGGGTACTCAAGTCTAGCTATCCAATTAGAAGACATGTTTGGAAGCCAAGCACTTTCTGGTTTAAGATTGTTTCAATCTGGATCAGAGTATTCATTGTTATACAAGGACAGAGAAGATAATTGGAGGGCTGTCGGTGATGTTCCATGGAAAGAGTTTGTAGAAAGTGTAAAGCGGTTAAGGATTGCAAGAAAGAATGGAGGCTTTGTTTCGTGTTCATCTAGATACGCCTAA 573 0.4014 MDSNSSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHPSGNLYDDDLMDWPHCNLNLKNSSTTHSRSVHENFDEEIDGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQALSGLRLFQSGSEYSLLYKDREDNWRAVGDVPWKEFVESVKRLRIARKNGGFVSCSSRYA* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03244 190 Gene3D - 86 185 - -
Rops6g03244 190 Pfam AUX/IAA family 56 178 IPR033389 -
Rops6g03244 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 178 IPR003311 GO:0005634|GO:0006355
Rops6g03244 190 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Rops6g03244 190 SUPERFAMILY CAD & PB1 domains 92 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03244 Rops-Chr6 56346674 56347900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03244 82 180 B3 DNA Binding Superfamily AT1G34390 31.313 8.17e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops6g03244 AUX_IAA 2.7e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03244 6 56346674 56347900 Rops6g03244 6 56346674 56347900 ECH