Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03228 ATGCATAACAAGGAAGTTTGCTCTCCTTCTTCCAACGGTGGATTTGGAGCCAACACCGCCGGTCAAATGCAGTCAAACGGCGGCGCTTTTGCTTCCTTCTACTCCGCTTTGTCGAACGAGAATATTCCGTCACTCTCAGCCAACTGCAGTAACGGCGGCGGCGTTTCGCTTTACCCGTACTCTGACTCGGGGACTCAGCACGACTCGTGCGTGATACAGAAGCACCAGGATATGGTGAATCGTCACAGCATGTGTCTCAGTCGCCTCGTGGAAACTTCCAAAGAGGTTGAAGCTCTGAGGCAAGAGAATGGCCAGCTTCGTGCTGTGAACAAGGAGCTGCAGAAGCAGTTGAACCTTGTCATTCAGGCTTCGCTGGAGAATCGTTTCGGTGGCGGTTCATCGAACCAGACTCAGACGACGCCGTTTGATCTTGTGCATGGGTTCCGTGGTTTCAACATTGGGGATGGGAAAGAGAACTGTGCTGATTGGAATACCAATAATATTAATAATAATAAGGAGCTTCAGGAAGTTTCTGATGAGAGTCCAACTAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGGTTCTCTCTTCCAAAAAGCATTTCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCCGTTGCCAGCAATAATGCTTGTCGCACCAAAGGTGCCACACGCCCACGCCCGTCCTCCACTCCATCTGATGCTGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCACTTGAGATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCGGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGCATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTTTATCACAACCTAAGCCCAGAACAACCAAGCTGGAGAGATAA 1053 0.5033 MHNKEVCSPSSNGGFGANTAGQMQSNGGAFASFYSALSNENIPSLSANCSNGGGVSLYPYSDSGTQHDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALRQENGQLRAVNKELQKQLNLVIQASLENRFGGGSSNQTQTTPFDLVHGFRGFNIGDGKENCADWNTNNINNNKELQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAVASNNACRTKGATRPRPSSTPSDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVACPYGHRCHFRHALTEQEKALSQPKPRTTKLER* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03228 350 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Rops6g03228 350 Gene3D - 300 336 - -
Rops6g03228 350 Gene3D - 261 299 - -
Rops6g03228 350 FunFam zinc finger CCCH domain-containing protein 15-like 260 299 - -
Rops6g03228 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Rops6g03228 350 SUPERFAMILY CCCH zinc finger 300 334 IPR036855 GO:0046872
Rops6g03228 350 Coils Coil 89 119 - -
Rops6g03228 350 SUPERFAMILY CCCH zinc finger 263 298 IPR036855 GO:0046872
Rops6g03228 350 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Rops6g03228 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 340 IPR045877 GO:0003729
Rops6g03228 350 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Rops6g03228 350 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Rops6g03228 350 FunFam Zinc finger protein 36, C3H1 type-like 1 300 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03228 Rops-Chr6 56137640 56140489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03228 60 339 C3H Transcription Factor Family AT1G68200 52.297 8.48e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g03228 zf-CCCH 2.8e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03228 6 56137640 56140489 Rops6g03228 6 56137640 56140489 ECH