Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03222 ATGCTCCCCACTCAACAACCCTCGTCATCCATCTCCAAAACCCCAAAACCTTCAATTCCACTTCCGTTTATAGCCATGAAGGACCGCCCCTCGCTGTCCTCCTATGGCGCCATTTACATTCCGCCGCACCTCCGCCTCCGCTCCGTCGTCACCTCCGCCAATTACAACAACAACTCCGGTCCCGTTGCCCCCAAACTCCGAGAAAACACTCCACCGACCCCTACCACTCTCCAAACGCCGTTACCGGAGAAGAGGAGCTCGCGTTACGTTTCTGCTTACGACGACGCCGTTTCCGAGGAAGGTTCCGATCGTGAATTTGAGGTTCCTTCACTACCGAGTGGTTCCCATAATGATAACATTGATGAGTGGAAGCGGAAATTAACCATGTTCTTAAATGACAAGAGTAAGCAAGAGTTGATCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGAGAAAATAGCAGTTTTGGCAAGCAGAATGGGATTGTATAGCCATGTGTATGCAAAGGTTGTTGTCTTCAGTAAGGTGCCACTTCCAAACTACCGATATGATTTGGATGATCGGCGACCTCAGAGGGAGGTGAGCATGCCTATCACCATGTTCAGGCAAGTTGATGCATATTTCGAGGAATACCTTAACCAAAAGTCCAGGGTGAACAAAAGCTTTTCAGATTTGTCATTTGCAAGATCGAGCAGTAGTGGCAGTATTGGTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACTAGCATCCAGTAAGACTGTTGCAGAGAAAGTTCTCCTGTGGAGAAGCTTAGAGATGCTTGATCAACAGCAAGCTTGGCAGGAATCCCCTGAAGGAAAAAGAATGCTAGAATTTCGTAGCAGTCTCCCTGCTTATAAAGAGAGAGAAGCAATATTATCTGTCATATCAAGGAATCAGGTAGTTATCATTTCAGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCCCAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGCATTTCTGCCATGTCTGTTTCTGAAAGGGTTGCCTCTGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGATTGGAGGGTATGAAAGGCAAAGATACCCATCTTCTTTTTTGCACCACAGGCATCTTATTAAGAAGATTACTAGCGGATAGAAACTTAAAAGGTGTCACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTCAAAGATATCCTTCCCCATCGACCAGAACTCAAACTAATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTCGTATTTTAATGGGGCTCCAATAATGAAAATTCCGGGCTTTACATACCCCGTTAGAACTCATTTTTTGGAGAACATTCTCGAAATGACTGGCTATAGATTGACTGCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCTGCTGTAGAGGATGCAATTAGAGCTGCTGATTTTAAAGATTACAGCCCACAGACACAGGAGTCTTTGTCATGTTGGAATCCCGACTGTATTGGTTTTAGTCTCATAGAATATATCCTATGCAATATTTGTGAGAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTAAAAGAGAAGCTCCTGACACATACTGTCTTGGGAGATCCAAGCCGTGTTTTGTTTCTGACGTGTCATGGCTCAATGGCTAGTTCGGAGCAGAGGTTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAATAGTACTAGCAACAAATATTGCTGAAACGAGTATCACAATAAATGATGTTGTTTTTGTTCTGGACTGTGGAAAGGCAAAAGAATCATCGTATGATGCACTGAATAACACGCCTTGTTTGCTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTGTGCAGAGTATCAATTGCCAGAAATTTTGAGAACACCTTTGCAATCTCTCTGTTTACAAATCAAAAGCTTAAGACTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTCTGCAATCTCCTGAGAAACTTGCGGTACAAAATGCAGTTGAATATTTAAAAATAATTGGGGCTTTGGATGAGAATGAGAATCTGACTATTCTAGGGCGCTATCTGGCAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTCATATTAGGTGCTATCTTTAATTGCCTGGATCCCATATTAACTGTTGTTGCTGGACTTAATGTGAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGATGCAGCAAAATCTCAATTCTCCGGTGCATACAGTGACCACCTAGCACTTGTAAATGCTTATGAAGGTTGGAAAGATGCTGAGATAGACCTGGCTGGATATGAATACTGCTGGAAAAATTTTCTTTCATCGCAATCCATGAATGCTATTGACGCTCTTCGCAGGGAGTTTATATGCTTGCTCAAGGATATTGGATTAGTTGATAGCAACACAGCCAGCTGCAATGCATGGAGCTATGATGTGAATCTTATCCGGGCAGTCATTTGCTATGGTCTATATCCTGGAATATGTTCTGTTGTGCATAATGAGAAGTCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCTTATACTCGAACTCAGTGAATGCTCGGGAAACTAAAATTCCATATCCATGGCTAGTTTTTAATGAGAAGATAAAAGTAAACTCAGTTTTTCTTCGTGACTCAACTGCCGTGTCTGATTCTGTGGTGCTTCTGTTTGGTGGAAGCTTATCAAAAGGAGATGCTGATAATCACTTAAAAATGTTAGGAGGATATCTGGAATTTTTCATGGAACCCACTGTTGCTGACATGTACCGGAATATAAGGAGAGAACTCGATGACCTCATTCAGAGCAAACTACTTTTTCCAAGAATGAGCATTCACTTGTATCATGATCTCCTGTCCGCGGTGCGCTTACTGATTTCCAATGACAAATGTGAAGGCAGATTTGTATTTGGTCGCCAGGTCCTTAAACCATCAAAGAAATCTGTGATGGTTTCACATCCAGCATTAGTTTCAAGGACTGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACCTTGCTTACAAGAGCAGGATATGCTGCACCCGTCTACAAGACTAAACAGTTGAAGAACAATCAGTTTCAGACTACAGTCGAGTTCAATGGAATGCAGATAATGGGCCAACCTTGTAACAATAAGAAGAGTGCAGAAAAAGATGCTGCAGCTGAGGCGCTGCAATGGCTGATGGGTAGAAAGCAAGCTGGCAAGGCACCGAAAGGTTCGGCGGCGGCATTGTTAGTGTACAGTCCTGGAACTCTGAATCATTTTGTTCATGAAAGCAGTGAAGCTCATATCCAATAA 3588 0.4247 MLPTQQPSSSISKTPKPSIPLPFIAMKDRPSLSSYGAIYIPPHLRLRSVVTSANYNNNSGPVAPKLRENTPPTPTTLQTPLPEKRSSRYVSAYDDAVSEEGSDREFEVPSLPSGSHNDNIDEWKRKLTMFLNDKSKQELISREKKDRRDFEKIAVLASRMGLYSHVYAKVVVFSKVPLPNYRYDLDDRRPQREVSMPITMFRQVDAYFEEYLNQKSRVNKSFSDLSFARSSSSGSIGTDEGLFEQPEPLASSKTVAEKVLLWRSLEMLDQQQAWQESPEGKRMLEFRSSLPAYKEREAILSVISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGKDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKDILPHRPELKLILMSATLDAELFSSYFNGAPIMKIPGFTYPVRTHFLENILEMTGYRLTAYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIRAADFKDYSPQTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLTHTVLGDPSRVLFLTCHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKESSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDACAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEKLAVQNAVEYLKIIGALDENENLTILGRYLAMLPMEPKLGKMLILGAIFNCLDPILTVVAGLNVRDPFLTPLDKKDLADAAKSQFSGAYSDHLALVNAYEGWKDAEIDLAGYEYCWKNFLSSQSMNAIDALRREFICLLKDIGLVDSNTASCNAWSYDVNLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLSKGDADNHLKMLGGYLEFFMEPTVADMYRNIRRELDDLIQSKLLFPRMSIHLYHDLLSAVRLLISNDKCEGRFVFGRQVLKPSKKSVMVSHPALVSRTESGPGGDNSKSQLQTLLTRAGYAAPVYKTKQLKNNQFQTTVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGRKQAGKAPKGSAAALLVYSPGTLNHFVHESSEAHIQ* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03222 1195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 467 IPR014001 -
Rops6g03222 1195 Pfam Helicase conserved C-terminal domain 556 687 IPR001650 -
Rops6g03222 1195 Gene3D - 251 468 IPR027417 -
Rops6g03222 1195 FunFam DExH-box ATP-dependent RNA helicase DExH3 1073 1162 - -
Rops6g03222 1195 FunFam DExH-box ATP-dependent RNA helicase DExH3 550 706 - -
Rops6g03222 1195 CDD DEXHc_RHA-like 306 466 - -
Rops6g03222 1195 MobiDBLite consensus disorder prediction 57 85 - -
Rops6g03222 1195 Gene3D - 553 706 IPR027417 -
Rops6g03222 1195 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 906 987 IPR011709 -
Rops6g03222 1195 SMART helicmild6 579 688 IPR001650 -
Rops6g03222 1195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 728 IPR001650 -
Rops6g03222 1195 FunFam DExH-box ATP-dependent RNA helicase DExH3 244 468 - -
Rops6g03222 1195 Pfam DEAD/DEAH box helicase 299 450 IPR011545 GO:0003676|GO:0005524
Rops6g03222 1195 SMART ha2_5 750 840 IPR007502 GO:0004386
Rops6g03222 1195 SUPERFAMILY dsRNA-binding domain-like 1089 1157 - -
Rops6g03222 1195 MobiDBLite consensus disorder prediction 98 118 - -
Rops6g03222 1195 CDD SF2_C_RHA 534 696 - -
Rops6g03222 1195 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1094 1159 IPR014720 -
Rops6g03222 1195 FunFam Putative ATP-dependent RNA helicase DHX36 730 834 - -
Rops6g03222 1195 PANTHER ATP-DEPENDENT RNA HELICASE 240 1010 - -
Rops6g03222 1195 SMART DRBM_3 1095 1158 IPR014720 -
Rops6g03222 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 866 IPR027417 -
Rops6g03222 1195 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g03222 1195 SMART ultradead3 288 481 IPR014001 -
Rops6g03222 1195 Gene3D - 1071 1162 - -
Rops6g03222 1195 Pfam Double-stranded RNA binding motif 1095 1157 IPR014720 -
Rops6g03222 1195 Gene3D - 730 834 - -
Rops6g03222 1195 MobiDBLite consensus disorder prediction 1 16 - -
Rops6g03222 1195 Pfam Helicase associated domain (HA2) 751 824 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03222 Rops-Chr6 55999412 56025985 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03222 6 55999412 56025985 Rops6g03222 6 55999412 56025985 ECH