Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03220 ATGGCTGCTACTTTCTCATATCCAGCTCTTGTAAGGTGCTGTTCCATGAGAGAAAACCATGACCAGCTTAAGCAACAAATGAACAGTAGCATCAGAGTTAATGGGACTTTTAGGTCCCCAATTAAAGTTGAGTCACTTAGCCAAACAGCTGAAGCAGCAACTACCACTTTTGGTCAAACAGTGACCATTGTTGAAAATGGTCAACGCCAAAACATCCCAACAAAGAAGCAGTTGGTTGATCCTCATCGTCAAGGGCTCATTATTGAAGGTGGAGTTGGTTATAGACAAACTGTTGTCATTAGGTCCTATGAAGTTGGCCCTGATAAAACTACAACACTTGAGACCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTATGGATGTCTGGACTTCTCAGTGATGGGTTTGGGGCAACACATGGAATGATGAGGAATGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTGATTGATTATTATCCCATCTGGGGAGAGGTAGTTGAAATTGACACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGTGACTGGCTGATAAGAAGTCAAGCCACAGGCCACATTTTTGCTCGTGCAACAAGCACATGGGTGATGATGAACCATAAAACAAGACGCCTCTCCAAAATGCCAGAAGAGGTGAGGAATGAAGTTGCACCGTGGTTTATAGAGAAGCAAGCAATAAAGGAAGATACTCCCGAAAAAATTGTCAAATTGGACAAAGAGGCAAAATACATGAATTCTGATTTGAAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATAATGTGAAGTATGTAAGATGGATGCTAGAGACCATCCCAGATAAAATTCTAGAGGGTAACCAATTATCAGGTATCACACTAGAGTACAGAAGGGAGTGTGGAAGCTCAGATATAGTTCAATCACTATGTGAACCAGAAGAAGATGATGAAACACTTCATGGTGCAGTGGAACCAGATTATTGCACAAATCTACTCAATGGGTTGTCCTTGGCATCATCAGCTATTGTAAATGGTAATGGTGGAGTCTTGACTTGCCTTGAACAGAGGCCAATAAGGTATACACACCTCTTACAAGTCAAAGGAGAGAAACAAAACGATGAAATTGTGAGAGGAAGGACTACATGGAAGAGAAAGTTCACTACAATGCCATTTTCCACTTAG 1200 0.4167 MAATFSYPALVRCCSMRENHDQLKQQMNSSIRVNGTFRSPIKVESLSQTAEAATTTFGQTVTIVENGQRQNIPTKKQLVDPHRQGLIIEGGVGYRQTVVIRSYEVGPDKTTTLETILNLLQETALNHVWMSGLLSDGFGATHGMMRNDLIWVVSRMQVLIDYYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNHKTRRLSKMPEEVRNEVAPWFIEKQAIKEDTPEKIVKLDKEAKYMNSDLKPKRSDLDMNQHVNNVKYVRWMLETIPDKILEGNQLSGITLEYRRECGSSDIVQSLCEPEEDDETLHGAVEPDYCTNLLNGLSLASSAIVNGNGGVLTCLEQRPIRYTHLLQVKGEKQNDEIVRGRTTWKRKFTTMPFST* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03220 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 93 240 IPR029069 -
Rops6g03220 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 254 388 IPR029069 -
Rops6g03220 399 CDD 4HBT 94 210 - -
Rops6g03220 399 Pfam Acyl-ACP thioesterase 93 325 IPR002864 GO:0006633|GO:0016790
Rops6g03220 399 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 19 392 IPR045023 GO:0006633|GO:0016297
Rops6g03220 399 FunFam Acyl-[acyl-carrier-protein] hydrolase 85 394 - -
Rops6g03220 399 Gene3D Hotdog Thioesterase 87 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03220 Rops-Chr6 55959192 55961514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03220 78 399 Acyl Lipid Metabolism Gene Families AT1G08510 47.059 5.18e-97 294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03220 6 55959192 55961514 Rops6g03220 6 55959192 55961514 ECH