Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03168 ATGACATTTACACGATCATCCAAAAGATTCTCCAGTCTTGTTCCACTCTCAAAATCTCACCCCGCTTCTTTCACTTCACTCTCACCTTCACCAAGTTCAAATTTTGAGCATCACCATTCCATACCCACCATCCAGTTCCCTCAAATCCCATTTGGGTCTCTCAAAGTTCACTCTTTCTCCTTTCACACATCACATGCTGAACCCAGCAACAACGCCAACCCAGATGCTGAAACAATCTGCAAAATCTTATCCAACAATGTTAAAGCCTCTCTTGACGACCTTTCGGTGGAGGTGTCGCCGGAGCTGGTGGTTGAGGTCTTGAACAAGCTAAGCAACGCCGGTGTTCTTGCCCTTTCGTTCTTCCGTTGGGCTGAGAGGCAAAAAGGGTTCAAGCACAACACTGAAAGCTTCCATGCTTTGATTGAGTCACTGGGTAAGATAAGACAGTTCAAGTTGATTTGGAATTTGGTGGATGACATGAAGCAACGAAAGTTGCTGAATAGGGACACTTTTGCCCTCATTGCTCGTAGATATGCAAGAGCTAGGAAGGTCAAGGAAGCAGTGGAGACATTTGAGAAGATGGAAAAATATGGTTTGAAGCCTCAAGTGTCGGATTTCAACAAGTTAATTGATGCTTTGTGCAAGTCCAAGTGTGTTGAGAATGCACAAGAGCTGTTTGATAAAATGAGGCACTCGAGGTTAGTGCCTGATGTTAAATCCTACACTATTTTGTTAGAAGGGTGGAGTCAGCAGCAAAACTTGTTGAGGGTCAATGAGGTGTGGAGGGAGATGAGGGATGAGGGTTTTGAGCCTGATGTGGTTACTTATGGTATAGTTATCAATGCATATTGTAAGGCTAAAAGATATAATGAGGCTGTTGGGTTCTATCATGAGATGCAAGCTAAGAGCATAACGCCTAGTCCCCACATTTTTAGTATTTTGATTAATGGTTTGGGTTCTGATAAGAGATTGGATGAAGCTCTTGAATTCTTTGAAAAATTCAAGGCTAGTGGTTTTGGCCCAGAAGTTCCCACTTATAATGCTGTTGTTGGGGCTTACTGCTGGTCAATGAGGATGGATGATGCATACAGGATGGTTGGTGAGATGAAAGAATGTGGGATTGGTCCAAATTCTCGAACATATGACATAATACTTCATCACCTGATAAAGGCTACAAGAACCCAAGAAGCGTACTCGGTTTTCCAGAGAATGAGTAGTGAGAATGGGTGTGAGCCAACTGTTAGCACGTATGACATCACGGTGAGGATGTTTTGTAATGAAGACAGATTGGATATGGCAGTGGCAGTTTGGGATCAGATGAAAGCCAAGGGAATCGTTCCTGGAATGCATGTGTTCTCCACGTTAATTTGTGCCTTGTGCCATGAAAATAAGTTGGATGAAGCATGTAAATACTTTCAACAAATGTTGGATGTGGGCATTAGGCCTCCTGCCAAAATGTTTAGTACCTTTAAGCAAGCTCTAATTGATGGGGGAATGGAGAATACTGCGGTATATTTTGCTCTGAAAATTGATAAACTGAGGAAAACTCCATTAATTGATTAA 1563 0.4248 MTFTRSSKRFSSLVPLSKSHPASFTSLSPSPSSNFEHHHSIPTIQFPQIPFGSLKVHSFSFHTSHAEPSNNANPDAETICKILSNNVKASLDDLSVEVSPELVVEVLNKLSNAGVLALSFFRWAERQKGFKHNTESFHALIESLGKIRQFKLIWNLVDDMKQRKLLNRDTFALIARRYARARKVKEAVETFEKMEKYGLKPQVSDFNKLIDALCKSKCVENAQELFDKMRHSRLVPDVKSYTILLEGWSQQQNLLRVNEVWREMRDEGFEPDVVTYGIVINAYCKAKRYNEAVGFYHEMQAKSITPSPHIFSILINGLGSDKRLDEALEFFEKFKASGFGPEVPTYNAVVGAYCWSMRMDDAYRMVGEMKECGIGPNSRTYDIILHHLIKATRTQEAYSVFQRMSSENGCEPTVSTYDITVRMFCNEDRLDMAVAVWDQMKAKGIVPGMHVFSTLICALCHENKLDEACKYFQQMLDVGIRPPAKMFSTFKQALIDGGMENTAVYFALKIDKLRKTPLID* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03168 520 Pfam PPR repeat 176 199 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Rops6g03168 520 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 110 418 - -
Rops6g03168 520 Pfam Pentacotripeptide-repeat region of PRORP 392 501 IPR033443 -
Rops6g03168 520 Pfam PPR repeat family 341 389 IPR002885 -
Rops6g03168 520 Pfam PPR repeat family 271 318 IPR002885 -
Rops6g03168 520 Pfam PPR repeat family 203 247 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Rops6g03168 520 Gene3D Tetratricopeptide repeat domain 109 265 IPR011990 GO:0005515
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 412 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Rops6g03168 520 Gene3D Tetratricopeptide repeat domain 406 482 IPR011990 GO:0005515
Rops6g03168 520 Gene3D Tetratricopeptide repeat domain 266 335 IPR011990 GO:0005515
Rops6g03168 520 Gene3D Tetratricopeptide repeat domain 336 405 IPR011990 GO:0005515
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Rops6g03168 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 170 201 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 274 307 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 416 447 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 310 341 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 451 482 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 240 273 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 206 238 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 380 414 IPR002885 -
Rops6g03168 520 NCBIfam pentatricopeptide repeat 345 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03168 Rops-Chr6 55269055 55270617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03168 183 503 Glycosyltransferase AT1G05670 25.234 4.45e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03168 6 55269055 55270617 Rops6g03168 6 55269055 55270617 ECH