Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02379 ATGATAGAGGAAGATCAAGGACAAGCGATCAATAACTTCCAGACCTATCAAGAACAGCTCCTCCTTCAGCAACAGATGCCTCAACAAAACAGTGATTTCTTTGGTGGTGGAAGAGGGTTGAACATGTACCCTGGTGATGTTTCTCCAATCTTGCAGCAACCATGGTCTATGCCTCCGGTTCATCCTTTCAACCCTGTGAGAGACCATGACCCATTTCTTGTCCCTCCACAACCTTCACCTTATGCAAGTTTTTTCAACAGAAGGGTTCCTTCTCTTCAGTTTGCATATGAGGGTTCATCCTCTGACCATCTTAGGATCATATCAGAGAGTCTTGGACCTGTGGTTCAACCTGGTTCAGCAGCACCCTTTGGCCTCCAAGCTGAGCTGGGTAAGATGACAGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTGCGTAGCTTGTTGCCCAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAATTGAAGCGTCAAACTTCTTTGATAGCAGAAACAAGTCCAGTACCTACTGAATCTGATGAGTTAACAGTGGATGCAGCTGATGAGGATGGCAGGTTTGTGATCAAAGCCTCACTTTGTTGTGAAGATAGGTCAGATCTTTTGCCTGAACTCATCAAAACCTTGAAAGCTTTAAGGTTAAGAACCCTCAAAGCTGAGATCACAACGCTTGGTGGGCGTGTCAAGAATGTGTTGTTCATCACTGGGGAAGAGGATTCAAGTAGCAGTGAGGAGCATGGTCACCACCACAACCAGCATCAACAGTACTGCATTAGTTCAATACAAGAAGCACTGAAGGAAGTGATGGAGAAGAGTGTTGGGGATGAGTCTACTTCTGGAAATGTCAAGAGACAAAGGACCAACGTGATATCAATATCCTAG 993 0.4512 MIEEDQGQAINNFQTYQEQLLLQQQMPQQNSDFFGGGRGLNMYPGDVSPILQQPWSMPPVHPFNPVRDHDPFLVPPQPSPYASFFNRRVPSLQFAYEGSSSDHLRIISESLGPVVQPGSAAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDAADEDGRFVIKASLCCEDRSDLLPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSSEEHGHHHNQHQQYCISSIQEALKEVMEKSVGDESTSGNVKRQRTNVISIS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02379 330 MobiDBLite consensus disorder prediction 311 330 - -
Rops6g02379 330 Gene3D - 139 200 IPR036638 GO:0046983
Rops6g02379 330 MobiDBLite consensus disorder prediction 308 330 - -
Rops6g02379 330 CDD bHLH_AtAIG1_like 139 217 - -
Rops6g02379 330 SMART finulus 150 199 IPR011598 GO:0046983
Rops6g02379 330 Pfam Helix-loop-helix DNA-binding domain 147 193 IPR011598 GO:0046983
Rops6g02379 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 200 IPR036638 GO:0046983
Rops6g02379 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Rops6g02379 330 FunFam transcription factor bHLH30 139 202 - -
Rops6g02379 330 PANTHER TRANSCRIPTION FACTOR BHLH30 33 325 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02379 Rops-Chr6 43349614 43352654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02379 5 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 60.724 4.31e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g02379 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02379 6 43349614 43352654 Rops6g02379 6 43349614 43352654 ECH