Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02378 ATGCTGGTTCGGAGAAGGTTGATGAGTTGGAGAAGGGTGGCAAAGTCCCTCCAAGCTCTGCTAGCTCATGGCATGCTCTTCTCCTTCACTCTTCTCCTTGCTCTCAAGCTTGACCATCTTGTCCTTTGCTCATGGTGGACTGTATTTCTTCCTTTATGGATTTTTCATTCTGTGGTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCAATGGGCTCCTTGCCATTCAATCATAGCAACACCATTACTTGTTGCATTTGAGCTGCTTCTTTGTATACATCTCAGCAGCAGTTATGAGGTGAATTTAAAGATTGTCTTCGTACCTCTGATAGTTTTCGAACTGGTGATTTTGATTGATAACATCAGGATGTGTCGGGCTTTGATGCCTGGAGATGATGAAAATTTGACCGATGAAGCAGTATGGGAAACTCTTCCTCATTTCTGGATATCAATATCCATGGTCTTCTTTATTGCTGCTACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCACAGTGTTTTGCGTTTCTTGTTTGTACAAAATGGCACAATCCAACAATTCATGGAAACTGTCACATTACAGAACCATGTTCATCTTCAAATGCCATAAGATACCTGGATTGGAGTAGAGGAGGCATAGTTGTTTCCACAGACGAAGATAGGCAGCAAAATGGGTTCTGCAATCTGCAGGACATTGGCGGGCATATTATGAAACTTCCATTCATTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAGTACGGAAAATATGCCAAATTGGGTCGTTTTTTCTCCTCTCTTTTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAATTGAGAAGATAATTATTTTACTCTATAGTGGAGACATTCCTGGAAGCTATTCATCCATATCATCTAAGTCCCGTGACTGCTTTGGGTTCTTGCATCGTGGGTCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGAAGCAGGGAAGAAGAAGCTAGACTTTATTGTGCTGGGAGTTCTGGGTATAATACTTTCTCTCCTGATACGGTGAAGAAAATGCCCAGAGCAGATCTTGTTGAAGAGATTTGGAGACTACAAGCTGCACTGGGAGAACAGACAGAAGTTACAAAACTTAGCCAGGAGGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTCGAAGAGCAGATTAGTGTGGTCCTACTTCCCTGCAAGCATCACATCCTTTGCAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCTGTCTGCCGTGGCACCATTGAAGAACGGATGGCTATATATGATGTGTAG 1404 0.4259 MLVRRRLMSWRRVAKSLQALLAHGMLFSFTLLLALKLDHLVLCSWWTVFLPLWIFHSVVARGRFSLPAPSMPHDRQWAPCHSIIATPLLVAFELLLCIHLSSSYEVNLKIVFVPLIVFELVILIDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGNCHITEPCSSSNAIRYLDWSRGGIVVSTDEDRQQNGFCNLQDIGGHIMKLPFIGFQILLFMHLEGTPSSTENMPNWVVFSPLFLLQGAGVLFAAYRLIEKIIILLYSGDIPGSYSSISSKSRDCFGFLHRGSRLLGWWSIDEGSREEEARLYCAGSSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQTEVTKLSQEEYERLQNEKILCRVCFEEQISVVLLPCKHHILCSTCCEKCKRCPVCRGTIEERMAIYDV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02378 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Rops6g02378 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 467 - -
Rops6g02378 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Rops6g02378 467 SUPERFAMILY RING/U-box 411 462 - -
Rops6g02378 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 466 IPR013083 -
Rops6g02378 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02378 Rops-Chr6 43329826 43338618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02378 8 467 C3H Transcription Factor Family AT1G73950 63.675 0.0 605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02378 6 43329826 43338618 Rops6g02378 6 43329826 43338618 ECH