Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02373 ATGGACGGAGGTAGTTGCACAGACGAAACTACTGCAACCAGTGACTCCCTTTCTGTATCCCTTATTCCAGCCAAGCTATCTCCACCGCCGATGAACACTCTCTGCCGCGTCGGCAGCGGAGCCAGCGCCGTCGTGGACAGTTGCGGCTGCTCTGGCGAGGCTGAATCCAGGAAACTTCCGTCGTCGAAATACAAAGGCGTGGTACCGCAGCCCAACGGCCGCTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCCTACGATATCGCCGTGCAGAGGTTCCGCGGCAAAGACGCCGTCACCAACTTCAAGCCACTCGCCGGCGCCGGGAAATATTCCGACGACGACGAAACCGAGTTCCTCAACTCGCATTCCAAATCCGAGATCGTCGATATGCTCCGGAAGCACACCTACGACGACGAGCTCCGGCAAAGCAAGCGAGGCACGTGCAGCCGGAAACAGCGACTCAACGGCGAAACGGCTGCTATAGCATGGTTCGGCGCGTGCGATGCCAAGGCGCGTGAGCAGCTGTTTGAGAAAACGGTTACGCCGAGTGACGTGGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCACTTCCCGTTAGGCGGTGCTTCCGGCTACGGAATATCGCCTAGCGTGGCGGCGGCGAAGGGAATGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTATTCATATTGGAACAGTAGCCAGAGCTACGTGCTTACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTACGAGCCGGAGATGCGGTTCGGTTCTACAGGTCGACCGGACCTGACCGGCAACTCTTCATAGACTGCAAGGCTAGGAGTAATGGTTTTGTTGGTGTCGGTGTTGGTAAGGTTGATACTAATACTGGTGGTTTGTTTATTCCGGTTGGACCGGTGGTTGAACCAGTTCAGATGGTTCGGCTTTTTGGGGTCGACCTTTTGAAACTACCCGGTTCTGATGGAATTGGTGGTAGCTGTAATGGTAAGAGGAAAGAGATGGAACTGTTTGCCTTAGAATGTAGCAAAAAGCCAAAGATAATTGGAGCTTTGTAA 1143 0.5494 MDGGSCTDETTATSDSLSVSLIPAKLSPPPMNTLCRVGSGASAVVDSCGCSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAVQRFRGKDAVTNFKPLAGAGKYSDDDETEFLNSHSKSEIVDMLRKHTYDDELRQSKRGTCSRKQRLNGETAAIAWFGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGASGYGISPSVAAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFYRSTGPDRQLFIDCKARSNGFVGVGVGKVDTNTGGLFIPVGPVVEPVQMVRLFGVDLLKLPGSDGIGGSCNGKRKEMELFALECSKKPKIIGAL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02373 380 FunFam AP2 domain-containing protein RAP2.8 62 119 - -
Rops6g02373 380 SUPERFAMILY DNA-binding domain 62 118 IPR016177 GO:0003677
Rops6g02373 380 Gene3D AP2/ERF domain 62 119 IPR036955 GO:0003700|GO:0006355
Rops6g02373 380 SUPERFAMILY DNA-binding pseudobarrel domain 190 302 IPR015300 -
Rops6g02373 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 354 IPR044800 GO:0003700
Rops6g02373 380 SMART rav1_2 63 124 IPR001471 GO:0003700|GO:0006355
Rops6g02373 380 CDD B3_DNA 191 289 IPR003340 GO:0003677
Rops6g02373 380 Gene3D - 182 307 IPR015300 -
Rops6g02373 380 Pfam B3 DNA binding domain 192 298 IPR003340 GO:0003677
Rops6g02373 380 ProSiteProfiles AP2/ERF domain profile. 63 118 IPR001471 GO:0003700|GO:0006355
Rops6g02373 380 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Rops6g02373 380 ProSiteProfiles B3 DNA-binding domain profile. 192 303 IPR003340 GO:0003677
Rops6g02373 380 SMART B3_2 192 303 IPR003340 GO:0003677
Rops6g02373 380 CDD AP2 62 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02373 Rops-Chr6 43235281 43236931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02373 5 380 B3 DNA Binding Superfamily AT1G25560 57.289 6.62e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Rops6g02373 B3 3.1e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02373 6 43235281 43236931 Rops6g02373 6 43235281 43236931 ECH