Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02371 ATGCAACGCTCGAAATTGGTGCCCCCTGATTACATCCAAGCTTTGGAAGAAGAACGTTGTAAGATACAGATGTTCTCGAAAGAGCTTCCTCTTTCTCTTGAACTGGTCACACAAGCCATTGAAAGTTATAGGCAGGAATTATCTGGTAGCACGACGAAATATGATTTGAATGCCCAACCAGAGTGCTCAGAACAGACAACATTGACAGAAGCTCCTGTTTTGGAGGAGTTCATTCCAATAAAGAGAAGGGCATCATCTTATTGTAATGAAGATGAGCGACATTCTCAAAAGCAAAATATTTCAAAGGAAAATAATAACAATGATAAAAGAAAATCTGACTGGCTTAGATCAGTTCAGTTATGGAATCCAGATCCCCCAACTGAGGAGGGTGTGACTGGGACAACACCTGTGATGGAATTGAGGAGAAGTGGAAGTGGTGGCGGTGCTTTCCAACCATTCCACAAAGAAGAAAGAGCACCCTCTTCGACTCAGAGAAAGCAGCGTCGGTGCTGGTCAGAGGAGTTGCACAAGCGCTTCTTGCATGCCTTTGAGCAGCTTGGAGGTGCAAATGCTGCCACACCAAAGCAAATAAGAGAGATAATGGATGTTGATGGCCTCACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCATACTAGGAGACCGAGTCCCACAGCTCATGAGGGTGCCAATTCACAAACAACACCTTTTGTTCTGTTAGGGAACATCATTATTCAACCATCAGAATATGCAGCGGTAGCTACCTCGACAACATCAACGGAACTGACCGAGGTTGCAGCACCCGCTAGAATTTACGCACCAGTGGCCACACGTCCTTCAGCTGTTTCAACTAAGGGGCCAGAGTTTCAGAGAGTAGGGATGTTAAAGCATTCAAACTCTAAAGAAAGGGCTAATGATCGTGGTGAAGGGGCGGTTGTTCATTCAAACTCCCCTTCCTCATCATGCTCCTCGCATACCATCACTACTTCTCGTGGCTATTGA 1011 0.45 MQRSKLVPPDYIQALEEERCKIQMFSKELPLSLELVTQAIESYRQELSGSTTKYDLNAQPECSEQTTLTEAPVLEEFIPIKRRASSYCNEDERHSQKQNISKENNNNDKRKSDWLRSVQLWNPDPPTEEGVTGTTPVMELRRSGSGGGAFQPFHKEERAPSSTQRKQRRCWSEELHKRFLHAFEQLGGANAATPKQIREIMDVDGLTNDEVKSHLQKYRLHTRRPSPTAHEGANSQTTPFVLLGNIIIQPSEYAAVATSTTSTELTEVAAPARIYAPVATRPSAVSTKGPEFQRVGMLKHSNSKERANDRGEGAVVHSNSPSSSCSSHTITTSRGY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02371 336 MobiDBLite consensus disorder prediction 298 336 - -
Rops6g02371 336 MobiDBLite consensus disorder prediction 87 167 - -
Rops6g02371 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 221 IPR006447 GO:0003677
Rops6g02371 336 MobiDBLite consensus disorder prediction 315 336 - -
Rops6g02371 336 FunFam Myb family transcription factor 165 223 - -
Rops6g02371 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 223 IPR017930 -
Rops6g02371 336 MobiDBLite consensus disorder prediction 298 312 - -
Rops6g02371 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 160 289 IPR044787 GO:0003700|GO:0006355
Rops6g02371 336 MobiDBLite consensus disorder prediction 87 115 - -
Rops6g02371 336 Pfam Myb-like DNA-binding domain 168 219 IPR001005 -
Rops6g02371 336 SUPERFAMILY Homeodomain-like 163 224 IPR009057 -
Rops6g02371 336 Gene3D - 165 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02371 Rops-Chr6 43157771 43159878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02371 10 280 G2-like Transcription Factor Family AT1G68670 46.177 3.60e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g02371 Myb_DNA-binding 5.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02371 6 43157771 43159878 Rops6g02371 6 43157771 43159878 ECH