Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01624 ATGGACACAGCTCAGTGGCCACAGGAGATCGTGGTGAAGCCAATAGAAGATATAGTAGTGACAAATACATGTCCAAAGCCTGCATCAGCTGCTTTGGAGAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGTCTCACACAACCTAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAGCATCCCCGTAGGTGGTGGTTCAAGGAAGAATAAGAGATCTTCTGTTTCTTGTTCCACTCCTTCAACCAAGAAGCTTCCTGATCTGGTCACACCTCCAATTTTGTCACAGACTTGCACTCAAAACCCTAAGATCCATCAAGGCCAAGATCTCAATTTGGCTTTCCCAACCACCACCCCAGATTTTAGAAATATCTCTGAATTGGTTCGACAAAATAACAACAGCATGCCTGCTCCAGCTTCTTCTTCTTCAGCTACCACCACCACAAGTACTACTACAGCTTCAACTTCTCATCTTTCAGCATTGGAGCTTCTTACTGGGATCACTTCAAGTTCAAGGGGTTTGCATTCTTTCATGCCTGTGCCAGTTCCAGCTGATCCAAACACTGTTTACACTTGTGGGTTTCCTCTGCAAGATTTTAAGCCAACCCTGAATTTCTCTTTAGATGGTATTGGAAGTGGGTACCCAAGCCTTCAGAGTGTTCAAGAAACAAGTGGGAGGCTTTTGTTTCCTTTTGAGGATTTAAAACAGGTTTCTAGCAGCACCACCACAACAATGGATCAGAATAATAAGGAGCAACAAGGAGATTCAACTGGGTATTGGACTGGAATGATAGGAGGAGGAGGATCATGGTAA 891 0.44 MDTAQWPQEIVVKPIEDIVVTNTCPKPASAALERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSSVSCSTPSTKKLPDLVTPPILSQTCTQNPKIHQGQDLNLAFPTTTPDFRNISELVRQNNNSMPAPASSSSATTTTSTTTASTSHLSALELLTGITSSSRGLHSFMPVPVPADPNTVYTCGFPLQDFKPTLNFSLDGIGSGYPSLQSVQETSGRLLFPFEDLKQVSSSTTTTMDQNNKEQQGDSTGYWTGMIGGGGSW* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01624 296 MobiDBLite consensus disorder prediction 86 115 - -
Rops6g01624 296 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Rops6g01624 296 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Rops6g01624 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 191 IPR045174 GO:0003700|GO:0006355
Rops6g01624 296 MobiDBLite consensus disorder prediction 93 111 - -
Rops6g01624 296 MobiDBLite consensus disorder prediction 265 296 - -
Rops6g01624 296 MobiDBLite consensus disorder prediction 265 285 - -
Rops6g01624 296 MobiDBLite consensus disorder prediction 158 181 - -
Rops6g01624 296 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01624 Rops-Chr6 33243489 33245578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01624 1 296 C2C2-Dof Transcription Factor Family AT4G24060 44.253 5.54e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops6g01624 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01624 - - gmx:100782268 412.535