Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01557 ATGGCAGATCACAAGAATCAAACCCCGGATTCAGGAACCATTTCTGTTGAGGCTCCACAAGAAAGAAGGAAACTTCCTAACTTTCTTCTATCTGTGAGACTTAAGTATGTGAAGCTTGGGTACCACTACTTAATCTCCAACGCTATGTACCTTTTGCTCATACCTCTTCTTGGGGTAGCTTCAGCTCATCTATCAACTATTTCTTACCAAGATGTTGTTCAACTATGGGAAAACCTCAAGTTCAATCTTGTCTGTGTGACTTTATGTTCTAGTCTTATAGTATTTTTTGTCACCCTTTACTTCATGAGCCGCCCAAGAGGTGTTTACTTGGTGGATTTTTCATGTTACAAGCCACATAAAGATTGCACGTGCACAAGGGAGATTTTCATGGAAAGGTCTGAACGTACTGGGACCTTTTCAGAGGAGAACTTGGCCTTTCAGAAGAAGATACTTGAGAGGTCTGGTTTGGGACAGAAAACTTACTTGCCTCCAGCAATCTTGAGTGTCCCACCAAACCCATGTATGGCAGAAGCAAGGAAAGAAGCAGAAGAAGTGATGTTTGGAGCAATTGACCAGCTTCTGGAGAAAACTGGGGTTAAGGCTAAGGATATTGGGATTTTGGTGGTGAATTGCAGCTTGTTCAATCCTACACCATCTCTCTCTGCAATGATTGTGAACCACTACAAGTTAAGAGGGAACATCCTAAGTTATAATCTTGGTGGCATGGGTTGCAGTGCTGGCCTTATCTCTATAGACCTTGCCAAGCAGCTCCTGCAGGTTCATCCCAACTCTTATGCGTTGGTAGTGAGCATGGAGAACATCACTCTCAACTGGTATTTCGGCAACGACCGGTCAATGCTAGTCTCAAATTGTCTCTTTAGAATGGGTGGAGCTGCAGTCCTTCTCTCTAACAAGCCTTCTGATCGTAGGCGAGCCAAATACCAACTCATCCATACAGTGCGTACTCATAAAGGTGCAGATGACAAATCTTATGGTTGTGTCTTTCAAGAAGAAGATGAGAAGAAAACAATTGGTGTGGCACTCTCAAAGGACTTAATGGCAGTTGCTGGAGAAGCCCTCAAGACCAACATCACAACACTGGGACCATTAGTCCTTCCTATGTCAGAGCAGCTCTTGTTTTTTGCAACTTTGGTTGCTAGGAAAGTGTTCAAGATGAAGATAAAGCCATACATCCCAGATTTTAAGCTAGCTTTTGAGCACTTTTGCATCCATGCTGGAGGAAGGGCAGTGTTGGATGAGCTGGAGAAAAATCTAGAACTCACTGATTGGCATATGGAGCCTTCAAGAATGACTCTTAATAGGTTTGGTAACACTTCAAGCAGTTCCTTGTGGTATGAATTGGCCTACACTGAAGCTAAAGGGAGGATTAGGAAAGGTGACAGGACTTGGCAGATTGCATTTGGTTCAGGGTTCAAGTGCAACAGTGCAGTGTGGCGTGCATTGAGGACCATTAATCCAGCAAAGGAGAAAAATCCATGGATAGATGAGATTCATGAGTTTCCTGTTCATGTCCCTAAAGTGTCAGCCGTTGGTTCCTCCTAA 1563 0.4363 MADHKNQTPDSGTISVEAPQERRKLPNFLLSVRLKYVKLGYHYLISNAMYLLLIPLLGVASAHLSTISYQDVVQLWENLKFNLVCVTLCSSLIVFFVTLYFMSRPRGVYLVDFSCYKPHKDCTCTREIFMERSERTGTFSEENLAFQKKILERSGLGQKTYLPPAILSVPPNPCMAEARKEAEEVMFGAIDQLLEKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAVLLSNKPSDRRRAKYQLIHTVRTHKGADDKSYGCVFQEEDEKKTIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELTDWHMEPSRMTLNRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWIDEIHEFPVHVPKVSAVGSS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01557 520 CDD CHS_like 90 485 - -
Rops6g01557 520 SUPERFAMILY Thiolase-like 293 489 IPR016039 GO:0016746
Rops6g01557 520 SUPERFAMILY Thiolase-like 93 312 IPR016039 GO:0016746
Rops6g01557 520 Gene3D - 111 487 IPR016039 GO:0016746
Rops6g01557 520 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 406 486 IPR013747 -
Rops6g01557 520 PIRSF Very_long_ch_3-ktacl-CoA_syn 27 520 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops6g01557 520 PANTHER 3-KETOACYL-COA SYNTHASE 77 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops6g01557 520 Pfam FAE1/Type III polyketide synthase-like protein 100 389 IPR013601 GO:0006633|GO:0016020|GO:0016747
Rops6g01557 520 FunFam 3-ketoacyl-CoA synthase 118 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01557 Rops-Chr6 32475350 32478199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01557 23 517 Miscellaneous Gene Families AT2G26640 77.576 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01557 6 32475350 32478199 Rops6g01557 6 32475350 32478199 ECH