Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00782 ATGGAGAGTGGTTGGAAGCCTAATGTTGAGATATCACCAAATTGTCCTAGATGTGGTTCTTCCAACACCAAGTTTTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTATTTTTGCAAGGGGTGCAGAAGATACTGGACTAAAGGTGGATCACTCCGCAATGTTCCTGTTGGTGGTGGCTGCAGGAAAAATAGAAGAGGTAACAAGAATTTATTAAGACAATCCATTGATGGTCTCACTTTCAAAAATTCACCTTGTGGTGATGTTATAGATAACCCAATTGGGCATTCTTATGATCCTAGGAGGACTAATTCATCTTCCAGCTCCTCAGTTGTGACTAATGGGCCAAATATTGATCTTGCACTTGTTTATGCAAATTTCCTCAATCAAAAGCCAGATTCTGGAGCTGGGCAAGAGGATCCAGATCAAATGCAAACTGTTTTTGATCCTTCTTTGGAAAATTCAAGGCTATTGAACACTGAAGTTGGTCCAAGTGCTTTGCATGAAGAACTTGGGCTAACTGAGTGTTTGAATCTTCCTGAACAACAACAACCATCCACAGAATCCAATTTTTGTGAGGGCAATAATAACCAAATGTACTTTAGTGAGTTCAACTCTATGCAGAGGCTTCAAAAAGATAGGACTAAGCAATGTAGTAGTCATGATACTTTGAATTTTGAGTTGCCACCTTTGCCAGGTGAAGATGCAGCTTCACATGATGTGATATGGTCCAATTCTGAGATGATGATTAACCATCCATTTCAAGTCACTCAACAACCACTTCTTGGATCTGAAGTTCATGATGCAGACTTGTTAATTGGTAATTGGAGCCCTTTTGATTTGCCAAGGGATGTTTCTTTTCCCAAGCCTTGA 876 0.3984 MESGWKPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKNLLRQSIDGLTFKNSPCGDVIDNPIGHSYDPRRTNSSSSSSVVTNGPNIDLALVYANFLNQKPDSGAGQEDPDQMQTVFDPSLENSRLLNTEVGPSALHEELGLTECLNLPEQQQPSTESNFCEGNNNQMYFSEFNSMQRLQKDRTKQCSSHDTLNFELPPLPGEDAASHDVIWSNSEMMINHPFQVTQQPLLGSEVHDADLLIGNWSPFDLPRDVSFPKP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00782 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 203 IPR045174 GO:0003700|GO:0006355
Rops6g00782 291 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Rops6g00782 291 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Rops6g00782 291 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00782 Rops-Chr6 19884025 19884900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00782 5 285 C2C2-Dof Transcription Factor Family AT3G52440 39.933 8.14e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops6g00782 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00782 - - gmx:100794208 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00782 6 19884025 19884900 Rops6g00782 6 19884025 19884900 ECH
Rops8g03559 8 75607562 75608338 Rops6g00782 6 19884025 19884900 PCT