Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01866 ATGAGTGGTGAAGGGGTCATGTCTGATAAGGATCCGGGTATCACGCTCTTTGGGATGAAGATTCCGTTGCCGGAATGTCAGATTCCGGCGAGCTCTCAAAGGGGTTGTCAGATTCAGGCCAACTCTACAACCATGAATGCTTGCAGTACTGAAAACTCTGCACAACTAGAGAATTCTTCTGATTTAAGGAATAGCAAACAAGAGTCCCTACATAATGTGCTGGCAAATGATTCAAAAGTGAATTCCAAGCCTGTGGAAGATAATATGGAGACTAGCAGCACAGATCAAGATAAAGCCTTTAAGAAACCAGACAAGATTCTTCCTTGTCCAAGATGCAACAGTTTGGAAACTAAATTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGCCATTTCTGCAAGAAATGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCTGTGGGTGCTGGGAGAAGGAAGAACAAGCACATAACTTCTCAATTCCAACACATTATTGTAGCTTCCGATGGAATTCCGGTCACCAGGTTTGAAACCAAAGACTCTTCTAATCAACAGTTTGTCTCAGCTCTGGAATCTTCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTATTAAAATTTGGTCCAGATGCCCCCCCTCTATATGAATCCATGGAGTCAATGCTTAATCTTAGAAACCACAAAAGAAGTGTTGATGCAAGTTCTATCAATTGTACTGAAAATGGAGAGGAAGAGGTATCCTTATGTGGATCTTCTGTGACAAATGCTTGTACTCAAGGGAATGAATTGTCTGAAAATAATACATCAAAGCCTTTACATTGTTACCCTGTTCCTCCATGGGTATTTCCTTGGAATCCAAGTTGGAACAATGTTGCTTCCATGGCTGCAATTCATCAATCTTCACTGCAAATGTATAACCCTTATAGCACTGACCCTGCTGCAATGCAGTGGTGTCCACCACGAATGGTGGCGGTTCCAACCATTTGCCCACCAAACATTCCCTTGCAATTTGTTCCTGGATCATACTGGAATGGAACACCTGTTTATGCTGCTGGAAATGGGACAGTTTCAATAGGTTCCAATGGTTGCCTTTCACCGTCTTCCTCTAATAGTAACAGCTGCTGCTCAGGCAATGGTTCCCCCACCCTTGGCAAACACACTAGAGATAATGTTTTCACTGATGAACAGAAATCAGAAATGTGCGTTTTGGTTCCAAAGACCCGTAGAACTGATGATCCAAATGAGGCCTCCAAAAGTCCTATATGGGCTACATTAGGTGTCAAGCATGATAACCACCATTTTGTATCAGAAGATGCTAATTCCAAAAAAATAGAACCTAAAGGAGAAGGCAAAGACCGTGTATTGGGTTTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGTTCATGCATTCCAGGAGAGCATATAA 1455 0.4199 MSGEGVMSDKDPGITLFGMKIPLPECQIPASSQRGCQIQANSTTMNACSTENSAQLENSSDLRNSKQESLHNVLANDSKVNSKPVEDNMETSSTDQDKAFKKPDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKHITSQFQHIIVASDGIPVTRFETKDSSNQQFVSALESSAVFRSSTDNGTVLKFGPDAPPLYESMESMLNLRNHKRSVDASSINCTENGEEEVSLCGSSVTNACTQGNELSENNTSKPLHCYPVPPWVFPWNPSWNNVASMAAIHQSSLQMYNPYSTDPAAMQWCPPRMVAVPTICPPNIPLQFVPGSYWNGTPVYAAGNGTVSIGSNGCLSPSSSNSNSCCSGNGSPTLGKHTRDNVFTDEQKSEMCVLVPKTRRTDDPNEASKSPIWATLGVKHDNHHFVSEDANSKKIEPKGEGKDRVLGLSQILEANPAAISRVHAFQESI* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01866 484 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Rops5g01866 484 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Rops5g01866 484 MobiDBLite consensus disorder prediction 74 89 - -
Rops5g01866 484 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Rops5g01866 484 MobiDBLite consensus disorder prediction 74 99 - -
Rops5g01866 484 PANTHER CYCLIC DOF FACTOR 2 9 483 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01866 Rops-Chr5 39222373 39225504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01866 11 483 C2C2-Dof Transcription Factor Family AT5G39660 34.579 1.40e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops5g01866 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01866 - - ccaj:109792807 753.821