Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01399 ATGTCGGAAGCAAAAGACCCAGCGATCAAGCTCTTTGGGAAGACGATCCCGGTGCTGGAGATCCCTGCCGGATCCGGTAACTCTGCCGTAGCTACGGCTTCATCTTCCGTTGATGTTGTTGTTGATGATGGTGTGGCTCAGAACCATGCTTCTTCTTCCATGAACTCTTCAAATTCCAACATGGATGATGAGGAGGAACATGAGATTGACCAGGACACAATGGAAGAGGAACCAACTGAGGGTAAGGAACAAGATGTAACCCGCACCCAATCATCAGAAAAGAATCCCAATCTAGATACTGCCTCAAGATCAGGGGAAGAGTCTGTTAACCCCTCCACTGGGGAGGAGGCTGTTACATTGAAAACGTCAAAGAATAAGGAAGAACAAGGTGAGAATTCACAAGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCTTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCACGTCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGGGCCATGAGGAATGTGCCTGTTGGTGCTGGTCGCAGGAAGAACAAGAACACTGCTTCTCACTATCGCCAGATAACTGTCCCTGAAGCAGCAGTCCAGAATTCTCAGTCTGACTTGCCAAATGGAGTCCATCATCCTTCCCTGAATTGTAATGCCACAGTCTTTGCATTTGGATCTGATTCACCCTTGTGTGAATCAATGGCATCTGTCTTGAACCTTGCTGATAAAGCAGTGAACAATTGCCCAAGAAATGGATTTAATAAACCAGAAGAACTAAGAATTCCTGTTTCTTATGCTGGTGGAGAAAAAGGAAATGATCATTCTAATAAATCTTCTATCACATCGATAAAGCCAACGGAAGGTTCAACTGCCAATAGGACACAAGAGCAAGTTATACCGGCTTGTCAAAGCTTTCCACCTCAAGTTCCTTACTATCCTGGTGCCCCTTGGCTTATCCCATGGAATCCAGCACAGTGGAACTCCCCAGTACCATCACCAGCTTTTTTCCCACAAGGATTTGCCATGCCAGTATATCCTGCAGCACCTTATTGGGGTTATACCGTGCCAGGTGCATGGAACATGCTATGGCTAGCACAACCATCATCACCAAATAGTACAGTCCCTAATTCTGGTCCAAACTCCCCAACCTTGGGTAAGCATTCAAGGGAAGAAAACATGTCCAAATCTAATGATGCAGTAGGTGCAGATGAACATAGTGAAGGAAATAATAAAGAAAAGTGCCTTTGGGTTCCAAAAACATTGAGGATTGATGACTTAGGAGAAGCAGCAAAAAGCTCTATATGGACAACTCTAGGGATTAAAGATAATAAGGCAGACTCAATTCAAGGGGGAGGACTCTTTAAAGCACTGTCATCAAAGGGTGATGAAAAAAATCACGCAATGCAAAACTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTCGGTCAATTAACTTTCATGAAACCTCATAA 1521 0.4464 MSEAKDPAIKLFGKTIPVLEIPAGSGNSAVATASSSVDVVVDDGVAQNHASSSMNSSNSNMDDEEEHEIDQDTMEEEPTEGKEQDVTRTQSSEKNPNLDTASRSGEESVNPSTGEEAVTLKTSKNKEEQGENSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNTASHYRQITVPEAAVQNSQSDLPNGVHHPSLNCNATVFAFGSDSPLCESMASVLNLADKAVNNCPRNGFNKPEELRIPVSYAGGEKGNDHSNKSSITSIKPTEGSTANRTQEQVIPACQSFPPQVPYYPGAPWLIPWNPAQWNSPVPSPAFFPQGFAMPVYPAAPYWGYTVPGAWNMLWLAQPSSPNSTVPNSGPNSPTLGKHSREENMSKSNDAVGADEHSEGNNKEKCLWVPKTLRIDDLGEAAKSSIWTTLGIKDNKADSIQGGGLFKALSSKGDEKNHAMQNSPVLQANPAALSRSINFHETS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01399 506 MobiDBLite consensus disorder prediction 90 119 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 472 506 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 383 402 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 478 506 - -
Rops5g01399 506 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Rops5g01399 506 PANTHER CYCLIC DOF FACTOR 2 1 506 IPR045174 GO:0003700|GO:0006355
Rops5g01399 506 MobiDBLite consensus disorder prediction 403 426 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 383 426 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 120 143 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 63 79 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 286 306 - -
Rops5g01399 506 MobiDBLite consensus disorder prediction 42 144 - -
Rops5g01399 506 Pfam Dof domain, zinc finger 142 199 IPR003851 GO:0003677|GO:0006355
Rops5g01399 506 MobiDBLite consensus disorder prediction 281 306 - -
Rops5g01399 506 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01399 Rops-Chr5 29210026 29213537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01399 6 506 C2C2-Dof Transcription Factor Family AT5G39660 43.378 3.29e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops5g01399 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01399 - - gmx:100784308 709.909