Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00453 ATGGTACTTGCAGCCCAATGTGATGACCCACGTGAGGAACTGCAGTCCCCTTTTGCTTCTAGATATGTGATTGATCCACTTCCCAAGTTTAAGTTACCAGACAAATCCATGCCAAAGGATGTAGCATATCAGATAATAAATGGTGAATTGATGTTGGATGGGACTCCAAGGCTCAACTTGGCTTCTTTTGTGACCACATGGATGGAACCTGAGTGTGACAAGCTCATAGTAGAATCCCTTAACAAGAACTATGTTGACATGGATGAGTATCCTGTCACCACTGATCTCCAGAACCGGTGTGTGAATATTATAGCACACCTTTTCAATGCTCCTATTGGAGCAGAAGAAACTGCTGTAGGAGTTGGAACTGTGGGTTCATCAGAGGCCATAATGTTGGCAGGTCTTGCTTTCAAAAGGAAATGGCAGTTGAAGAGAAAATCAGAAGGCAAACCATATGACAAGCCTAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCTAACTACTTTGAAGTTGAGCTCAAGGAGGTGAAACTCACTGAGAAAAGTTTTGTGATGGACCCAGTGAAAGCAGTAGAATTGGTGGATGAGAACACCATCTGTGTTGCAGCCATTTTAGGTTCAACAATGAATGGAGAGTTTGAGGATGTGAAGCTTCTCAATGAACTTCTTACCAAGAAGAACAAGGAAACAGGGTGGGAAACCCCAATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCTCCATTTATCTACCCTGATCTTGAGTGGGATTTTCGTTTGCCATTAGTGAAGAGTATCAATGTTAGTGGTCACAAGTATGGACTTGTTTACCCTGGTGTTGGTTGGGTTGTTTGGAGGAACAAAGATGAGTTGCCAGATGAACTTATCTTTCACATCAATTATCTTGGATCTGATCAACCCACTTTCACTCTCAATTTCTCCAAAGGCTCCAGTCAAATAATTGCTCAATATTACCAATTCTTACGCCTTGGCTTTGAGGGTTATAAGAATATCATGAGCAATTGCTGGGAGAATGCAAAAGTGCTGAAGGAAGGAATAGAGAAGACTGGGAGGTTCAACATTCACTCCAAGGATATAGGAGTGCCACTAGTAGCTTTCTCTTTGAAAGACAGCACCAAATACACAGTGTTTCAGATATCAGATGAATTGAGAAAATATGGATGGACTGTTCCAGCCTATACCATGCCACCTGATGTTGAACACATTGCTGTTCTTAGAGTTGTGATTAGGGAAGATTTCAGTCGTGGCCTTGCAGATAGACTTGTTACTGACATTGTTGAAGTTTTGAAGCTCTTGGACAATCTTCCAAGTACCAAAACTTCTCAGGTTACAGTTGTTACTAATGAGAAAGGTGAGAAGCTCAAGAAGAGAGCATTGGAGATTCATCCAGAGATTGTCAAGTACTGGAAGAGGCTCAAGGATGGCAAGCCAGCTGGAGTGTGCTAA 1482 0.4204 MVLAAQCDDPREELQSPFASRYVIDPLPKFKLPDKSMPKDVAYQIINGELMLDGTPRLNLASFVTTWMEPECDKLIVESLNKNYVDMDEYPVTTDLQNRCVNIIAHLFNAPIGAEETAVGVGTVGSSEAIMLAGLAFKRKWQLKRKSEGKPYDKPNIVTGANVQVCWEKFANYFEVELKEVKLTEKSFVMDPVKAVELVDENTICVAAILGSTMNGEFEDVKLLNELLTKKNKETGWETPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRNKDELPDELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKNIMSNCWENAKVLKEGIEKTGRFNIHSKDIGVPLVAFSLKDSTKYTVFQISDELRKYGWTVPAYTMPPDVEHIAVLRVVIREDFSRGLADRLVTDIVEVLKLLDNLPSTKTSQVTVVTNEKGEKLKKRALEIHPEIVKYWKRLKDGKPAGVC* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00453 493 FunFam Glutamate decarboxylase 361 448 - -
Rops5g00453 493 NCBIfam glutamate decarboxylase 18 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Rops5g00453 493 Gene3D - 1 65 - -
Rops5g00453 493 Gene3D - 66 360 IPR015421 GO:0003824
Rops5g00453 493 FunFam Glutamate decarboxylase 4 65 - -
Rops5g00453 493 CDD DOPA_deC_like 59 439 - -
Rops5g00453 493 PANTHER GLUTAMATE DECARBOXYLASE 1 493 IPR010107 GO:0004351|GO:0006536|GO:0030170
Rops5g00453 493 FunFam Glutamate decarboxylase 66 360 - -
Rops5g00453 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Rops5g00453 493 SUPERFAMILY PLP-dependent transferases 12 444 IPR015424 -
Rops5g00453 493 Gene3D - 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00453 Rops-Chr5 7748009 7755031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00453 1 493 Calmodulin-binding Proteins AT3G17760 74.949 0.0 773
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00453 5 7748009 7755031 Rops5g00453 5 7748009 7755031 ECH