Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00292 ATGGATCCTCCACCACTCTCCACCACCACCATGGCTTCAACCACCATCCAACAAAACCTCCCTGACTCAATTGAGTCCTCATCATCACCATGTTTTCGCATTGGTGAAACAATGAATGATGAGCCTCTCCCTGCTGTCCCTGGTGCCAAGCTTAGACTCATGTGTAGCTATGGTGGCCATATCATGCCAAGACCACATGATAAGTCCCTCTGTTATGTTGGTGGTGACACCCGAATCGTCGTGGTGGATCGCCATTCCTCTCTGAAAGACCTCTGTTCACGCCTTTCTCAAACCATTCTTAATGGAAGACCCTTCACACTCAAGTACCAGTTACCCAATGAAGACCTTGATAATCTCATCTCAGTCACCACTGATGAAGATCTTGATAACATGATTGAAGAGTATGATCGTACAGCAGCTTCAGCCTCTTCATTGAAACCTTCACCTTCAAGACTCAGGGTGTTCCTGTTTTTCACAAAACCAGAGTCCACTGTTTCAATGGGATCACTAATTGACGATGCAAAATCAGAGACATGGTTTGTTGATGCACTTAACAACTCAGGGATCTTATCAAGGGTTGTGTCTGATTCTGCTGCAACTGATTGCTTTGTGAATCTTGATGGTGTTGTTCCTGCTAGTGATTCAAGCAATAACTTGGAGGCTCAGGGTGCAGTGGCAGAGTCTTTGACTCTGCTTGATAACACCAATAACAATGTTAAGAATGTTTCTGATGTTGTGAATTCAACACCTGGTTCACCTATGTTGGAGAAAAGTTCTTCTTCTTCTTTGGCTAATTTGCCTCCAATTCGGGTTCGTGTTGATGAAAATGGTGGTAGCAGGCTTCAGCAAGAGAAGAGGGTTGGTGTGGTGGAAGAGCAATTTGCTCAGATGACATTTACTACAAGTGGGGTGAAGCAAGATGAAGGGTATGTTGTTGTTTCTTCCGCTGTGGCTACGCCTGCAATTCCTGCAGCTGTGACTATGGCATCAGCTGGGGTGGTTACTACTAGTGATAATATGAATAGGGTTGTTTCTGATGATGAAAGATCAGATCATGGAGCACCTGCTATGTCTAGGAAGCCCCCTTTACCATTGCAGCTTGTGCAACAAAGGACTAGTGGTGGTTTGAGTTTGCCTTCTCCGGATTCAGTTACAAGTGATAGTAGCATTGCATCTGCAAATTCCTTCTCCAAGACTGTTTACTATCAAGTTCAAGATCAAGTCCAACAAGCTGCACATGTAGACAACAAAGCTCTTCCTTTGCCAAATTCCAACAAGAGTGAAATTTTAGATCATTTCCCTGGACTACAAAGGGAACAAGTTCATGATTTTGGTTATACATTACCCCCACAATTGGATCAAAATCAGCAACTCCAGCAGCAGCCATTTGTTCATTCCAGCACTCACTACATCCACCACCCTACAGCCACAGGTCAAGTGCCAGTATCATCCTACTACCCAGTTTATGCCCCACCATCACAACCACAACTTCACCATCCAATTGGTCAGCAACAGTACCCAGTTTATGTAATGCCTGTTGGACCTACACAACCATACAACATGGCATTGCAACCCAATATAGCTGACCCTAATGTGGTAGCCTCAAATAGGCCACTGATACCCCAAAGTGCTGTTACCTCAGCAGCATACAAAGATGGAACTCCACCTATTTACCCCACTAAGTCAGCTACCCCTACTATACCTGAGGTGACTCCAAATGTTTACAAACCACCCCCTGTGGCATCAAATTCTGGATTTGTTCAAATACCTTCCAATCAATTTCAACAACAGTATGTGGGGGTGCCTCAATTCCATCATCCACCACAGCGCATTACTATAGCTCCATCTGGTGCTACTAATTATGGTTATGAATATGGTGGCACTGTGCAGGACCAAGCATACTACACACAACAACAACAAACTACTACTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCAGCTGCAGCTGCAGCATTATCAGATGCTTCAAAACAATTTCCTGCAGATAATATTCAGCAGCCAAATAGAACTTCACAGCCAGTATGA 2052 0.444 MDPPPLSTTTMASTTIQQNLPDSIESSSSPCFRIGETMNDEPLPAVPGAKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRHSSLKDLCSRLSQTILNGRPFTLKYQLPNEDLDNLISVTTDEDLDNMIEEYDRTAASASSLKPSPSRLRVFLFFTKPESTVSMGSLIDDAKSETWFVDALNNSGILSRVVSDSAATDCFVNLDGVVPASDSSNNLEAQGAVAESLTLLDNTNNNVKNVSDVVNSTPGSPMLEKSSSSSLANLPPIRVRVDENGGSRLQQEKRVGVVEEQFAQMTFTTSGVKQDEGYVVVSSAVATPAIPAAVTMASAGVVTTSDNMNRVVSDDERSDHGAPAMSRKPPLPLQLVQQRTSGGLSLPSPDSVTSDSSIASANSFSKTVYYQVQDQVQQAAHVDNKALPLPNSNKSEILDHFPGLQREQVHDFGYTLPPQLDQNQQLQQQPFVHSSTHYIHHPTATGQVPVSSYYPVYAPPSQPQLHHPIGQQQYPVYVMPVGPTQPYNMALQPNIADPNVVASNRPLIPQSAVTSAAYKDGTPPIYPTKSATPTIPEVTPNVYKPPPVASNSGFVQIPSNQFQQQYVGVPQFHHPPQRITIAPSGATNYGYEYGGTVQDQAYYTQQQQTTTPLLPQYQSMTPAAAAAALSDASKQFPADNIQQPNRTSQPV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00292 683 PANTHER OS05G0427100 PROTEIN-RELATED 22 555 - -
Rops5g00292 683 CDD PB1_UP2 54 157 - -
Rops5g00292 683 Pfam PB1 domain 66 157 IPR000270 GO:0005515
Rops5g00292 683 SUPERFAMILY CAD & PB1 domains 66 168 - -
Rops5g00292 683 MobiDBLite consensus disorder prediction 667 683 - -
Rops5g00292 683 SMART PB1_new 65 157 IPR000270 GO:0005515
Rops5g00292 683 MobiDBLite consensus disorder prediction 344 364 - -
Rops5g00292 683 ProSiteProfiles PB1 domain profile. 50 157 IPR000270 GO:0005515
Rops5g00292 683 Gene3D - 70 157 - -
Rops5g00292 683 MobiDBLite consensus disorder prediction 656 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00292 Rops-Chr5 4503139 4505691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00292 39 186 MAP Kinase Kinase Kinase AT5G57610 43.333 7.57e-26 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03237 6 56263048 56266045 Rops5g00292 5 4503139 4505691 ECH
Rops5g00292 5 4503139 4505691 Rops5g00292 5 4503139 4505691 ECH