Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02040 ATGCAAGACCCAACAGCATTCCAACCCATGAAACCCCACTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCTGCAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAACCACGCCATTTTTGCAAGAACTGCAAAAGGTATTGGACTAAAGGTGGTGCTTTGAGAAACATCCCAGTTGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCTTCAAGCTCCAAACGATCTACATCATCATCATCTTCCCCATCACCATCTATCTCCTCTGCTGCAGCTCCAGAGGCTGGCCCGACCCGGGTTTACACAAACCCAGTTGATCAAGACCAAAGGGTGCTTAACATGGGTGGGAGTTTCAGTTCCCTTTTGGCTCCAACTGGACCTTTTGGGAACCTCTTTGAGGGTCTGAATTCAAATGGGTCAAGTCTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAATGAGAGAACTTGTGGCCTGGGTTTGAATTCGGATTCGGGTAGTAACCCGGGTTTGAAGATGCAGAGTAATGGGAGCTCAGAGAGCTTTCTGGGTATGCAAAATGGTGATTCAAGTTGTTGGAATGGTAGCCATGGTTGGTCTGATCTTGCAATATACACACCTGGCTCAAGCTTTCAGTAA 657 0.4642 MQDPTAFQPMKPHFPEQEQLKCPRCDSANTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGSRKSTKRSSSSKRSTSSSSSPSPSISSAAAPEAGPTRVYTNPVDQDQRVLNMGGSFSSLLAPTGPFGNLFEGLNSNGSSLKMVQMGEFGENERTCGLGLNSDSGSNPGLKMQSNGSSESFLGMQNGDSSCWNGSHGWSDLAIYTPGSSFQ* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02040 218 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Rops4g02040 218 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 158 IPR045174 GO:0003700|GO:0006355
Rops4g02040 218 MobiDBLite consensus disorder prediction 61 108 - -
Rops4g02040 218 MobiDBLite consensus disorder prediction 69 97 - -
Rops4g02040 218 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Rops4g02040 218 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02040 Rops-Chr4 46667457 46669232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02040 11 138 C2C2-Dof Transcription Factor Family AT1G51700 56.429 1.48e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops4g02040 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02040 - - gmx:100790822 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02040 4 46667457 46669232 Rops4g02040 4 46667457 46669232 ECH
Rops7g00312 7 4007611 4009331 Rops4g02040 4 46667457 46669232 PCT