Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00802 ATGGTGTTTACTTCCATACCAACAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATCATCAACCCGGAAACAACGGTTCCACCTCTCAGCAACTTCTTCCACCACCGCTGCAGCCGCCACCACAGCCCCATGGAGGTGGTGGTACCGCTGGATCGATCAGGCCGGGATCGATGGCTGATAGGGCAAGGATGGCCAACTTGCCTATGCCGGAGACTGCACTCAAGTGTCCACGCTGTGAATCCACCAACACAAAATTTTGCTATTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGCAGAAGGTACTGGACAAGAGGCGGTGCCCTGAGGAACGTTCCGGTCGGTGGCGGCTGCCGGAGGAACAAAAGAACCAAAGGAAGCAGCAGCAGCAACACCGGAAAGTCCCCGGCGAGCTCAGACCGTCAAACGGGGAGTGTTAGTTCCACCAACTCAATCTCTTCAAATAGTGGCTCTATTGCTGATATGGTAGGCCCTAACCCCCATATGCCACCACTGAGGTTTATGGCTCCATTGCATCAACTCACTGATTTTGGAGCTGAAAACATGGGCTTAAACTATGGCCTAAGTTACAACCCCATTTCAGGTCCAATGGGAGGAATGGGGGACTTGAGTTTCCAAATAGGAAATGCTTTAGGTGGGGGCAATAATGGTTGTGGCTCCCTCTTATCTTCAACTGGTTTAGAGCAATGGAGGATGCCACAAACACATCAGTTTCCCTTTTTCGAGGGTTCACCAGCTGGTTTATACCCTTTTGAAGTTAGTGCTGAAGTAAGTGGATATGGTGCTGGAGGGGTTAGTCATGTCAGGCCAAAGGTTTCTACTTCTGGGGTGATAACTCAGCTTGCTTCAGTGAAAATGGAAGATAGTAGGGAAATCAATTTGTCAAGCCAGTTCTTGGGAAGCAATAATCAAGCAAGTGAACAATATTGGACTACTGGTACTTCTTCAGCTTGGACAGATATTTCGGGTTTTAGCTCTTCTTCCACTACTAGTAACCAGATTTAG 1050 0.4886 MVFTSIPTAYLDAANWQQQQPNHQPGNNGSTSQQLLPPPLQPPPQPHGGGGTAGSIRPGSMADRARMANLPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSSNTGKSPASSDRQTGSVSSTNSISSNSGSIADMVGPNPHMPPLRFMAPLHQLTDFGAENMGLNYGLSYNPISGPMGGMGDLSFQIGNALGGGNNGCGSLLSSTGLEQWRMPQTHQFPFFEGSPAGLYPFEVSAEVSGYGAGGVSHVRPKVSTSGVITQLASVKMEDSREINLSSQFLGSNNQASEQYWTTGTSSAWTDISGFSSSSTTSNQI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00802 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 175 IPR045174 GO:0003700|GO:0006355
Rops4g00802 349 MobiDBLite consensus disorder prediction 18 35 - -
Rops4g00802 349 MobiDBLite consensus disorder prediction 18 59 - -
Rops4g00802 349 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Rops4g00802 349 MobiDBLite consensus disorder prediction 130 169 - -
Rops4g00802 349 MobiDBLite consensus disorder prediction 118 173 - -
Rops4g00802 349 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Rops4g00802 349 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00802 Rops-Chr4 21525411 21527138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00802 1 319 C2C2-Dof Transcription Factor Family AT5G02460 40.052 1.76e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops4g00802 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00802 - - pvu:PHAVU_010G013500g 402.519