Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02747 ATGCATCACCAAGGTAATTGTGAAGATAAGATGAGTGTTATGTATAGTCATGCTCTCAAGTACTCTGTAGGTGAGGCAAGGAGGAACCAAGAAATGGATTCAAATGTTGGTCACTTGCAACAACATTGTCACCAGAACAATTCAGGACTATTGAGGTACCGTTCTGCTCCAAGTTCACTGTTGACAAGCCTTGTGGATAACAACATTGATTGTGTTAATGAGGAAGCTTTCAGAAGTGAGGATCATCAGCATTATAATCCCTCTTCAAGTTCAGAAATGGAAACCATGTTGGATAACAATGTGTTGACTAATTCAGAAACTTTGAATGAGTTTGGAGGCAAGCATGTGAAGCAAGAAGCGGGGGACTCTGTTTCACAAGGGCCACCACAACACAATGGTTACTCTTATGCTTCTTCAGGTCAACTAATTTACCAAACTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTTAGGGAATACTTTTGGTGGCTCATTCAGTGCAGTGAGTTCCATGGCTTTAGAGAATTACACACAAACTAAAATGGGTTCCAACAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATTATTCAGTTGATAATGGTCTGGCAACATTGAGAGAAGTAGGAAGTTTTAGAGGCTGTGATGTCTCAAATGGACAAGTTACTACATCTACTAGTGGGTTACATGGTACTATGAACTTCTCATCTAGGCCCTCCTCTTGCTCCAGCAGGATGCCACAGATTGCTGAAAATGAATATGAAGACCTGCAAGCAAATTGTGTTGAAAGTAGAATCATTGGAAATGATAATGGCAACAATAAATGTTACATGCCTAGCAGCACCAGTGACTTCTGGGATGGTTCTGTATTCAATGGCCACAAAAAAACCAGTAACAATGGGGAGATCATGTTTTCCACCACAAATGCTTTGGAAACTCAGGATGCAGACTTTGGATATGAAAAACTTGGTTTGAGCCACCATTTGAGTCTGCCTAGCTCTTCTACTAAGATAGCTAACATGGAGAAGTTTTATCAAATTCAAAGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCACATGAGTACATTAGAGACCTGCAGAAACAAGTCAAGATACTAAGAGAAACTAGGGCAAGGTGCACTTGTACAAGTAATTAG 1311 0.4058 MHHQGNCEDKMSVMYSHALKYSVGEARRNQEMDSNVGHLQQHCHQNNSGLLRYRSAPSSLLTSLVDNNIDCVNEEAFRSEDHQHYNPSSSSEMETMLDNNVLTNSETLNEFGGKHVKQEAGDSVSQGPPQHNGYSYASSGQLIYQTQQIQGLPNGSLGNTFGGSFSAVSSMALENYTQTKMGSNNCSNLIRQKSSPAGFFSNYSVDNGLATLREVGSFRGCDVSNGQVTTSTSGLHGTMNFSSRPSSCSSRMPQIAENEYEDLQANCVESRIIGNDNGNNKCYMPSSTSDFWDGSVFNGHKKTSNNGEIMFSTTNALETQDADFGYEKLGLSHHLSLPSSSTKIANMEKFYQIQRSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAHEYIRDLQKQVKILRETRARCTCTSN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02747 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Rops3g02747 436 Pfam Helix-loop-helix DNA-binding domain 373 418 IPR011598 GO:0046983
Rops3g02747 436 CDD bHLH_AtbHLH_like 372 425 IPR045239 -
Rops3g02747 436 SMART finulus 373 423 IPR011598 GO:0046983
Rops3g02747 436 Gene3D - 369 434 IPR036638 GO:0046983
Rops3g02747 436 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 427 - -
Rops3g02747 436 FunFam Transcription factor bHLH130 family 368 436 - -
Rops3g02747 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 430 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02747 Rops-Chr3 58592478 58611296 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g02747 HLH 3.8e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01953 7 32371269 32374574 Rops3g02747 3 58592478 58611296 ECH
Rops3g02747 3 58592478 58611296 Rops3g02747 3 58592478 58611296 ECH