Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02715 ATGAAATCGCTTACTGTTAATACTGAAGATTCATTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATTTTGAAGGTTTCAAGCTGCTTTTAGATAAGGAACCTTCTTCAATCAACGAAGTTGGGCTCTGGTATACCCGGCAAAATGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTGATGGTTGCTGTTACCTATGGTAGCATTGATGTTCTGAAGCTGATTCTCTCGTGCCCGGAAGCAGATGTGAATTTTACTTGTGGGGTGAATAAAAGCACTGCCCTTCATTGTGCTGCTTCTGGTGGGTCTGTTAATGCTGTTGATGTTGTGAAGCTTCTTTTATTGGCTGGTGCTGATGTAAATTCTGTGGATGCCAATGGAAGTCGACCTGTTGATGTCATTGTTGTTCATCCTAAGCTGCAAGGCATGAAAGCAATTCTTGAGGAACTGCTTTCGGATAGTGCTTCTGATGGTTCTGTTGGTGATTTCTCTGTTCCGGTATCGGTTAATTCCTCTAGTTCTGGTTCACCTGCACGATCATCGTCTGTTGAAAATGGAATGCCATGCTCTCCTTCAGGATCACCACCTTCTTCCGGGGCCTCGAAATTTAATGAAGCAGCTATTGGCTCTCTGTCTGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAGAACAGCATATATGCAACGGATGAATTTCGAATGTTTTCTTTCAAGGTTCGTCCTTGTTCCCGTGCTTACTCTCATGATTGGACTGAGTGTCCATTTGTGCATCCTGGAGAGAATGCCCGGAGGAGAGACCCTAGAAAGTTCCATTACAGCTGCGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGCAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACACGCCTCTGTAAAGATGGCACTAGTTGCAATAGAAGGGTGTGTTTTTTTGCTCACATTCCAGAGGAACTTCGACCACTTTATGTGTCCACTGGATCTGCTGTTCCTTCGCCACGTTCATCTTCCTCTGCTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTTTGCCGGGTTCACCTTCGTCTGTCTCTTCCATGTCTTCATCCCATTTTGGCCAGCCGATGTCCCCCACTGCAAATGGCATCTCACTCTCATCTGCTGCTTGGGCACAGCAAAATGTCCCAGTTCTTCATTCTCCAGGAAGCAATCTTCATTCTAGTCGCTTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACTTGAAGATTTGAATGTGTTGCCTGATTTTGATGGCCAACAGCACCTTATGAATGATTTGAGCTGTTTCTTACAGCCCCATCCTGGTGCTGTTTCACGGTCCAAGACACTAACCCCATCAAATCTGGAAGAGCTCTTTTCTGCTGAATTTTCTTCATCTCCCCGATACTCTGATCCAGCAGTGGCTTCTGTTTTTTCCCCTACACACAAATCAGCCATTCGAAATCAGTTTCAGCAGCTTCAAAGTAGGTTATCACCTATAAATACCAACGTGCTGTCTCCTAAGAATGTTGATCATCCTCTGTTACAGGCTTCATTCGGTGTCTCTCCATCTGGGAGGATGTCACCTAGAAATGTTGAACCAATCTCCCCAATGAGCTCTCGCATGTCTGCATTTGCTCAGCGAGAGAAACAGCAGCAACAGCTAAGGAGTCTCAGTTCTAGGGACCTTGGTGCCAACAATCCTGCCTCAGTTGTTGGCTCCCCTGTAAACACTTGGTCTAAGTGGGGATCTCCAAATGGAAAAGTTGATTGGTCAGTTAATGGAGATGAACTAGGTCGTCAAATGCAGAAACTATCCCCATTTGAACATAAAAACAATGGGGAAGAGCCTGATCTATCTTGGGTCCAATCCCTAGTAAAGGAATCCCCACCTGAGATGATTAAAGAGAAGCTTGCATCTTCCGGCCCTATTGCATCTGCTGATGGAGTGAATCCCAATTCCCAAATTGAATCCATTGATAATTCAGTTCTAGGAGCTTGGCTTGAGCAAATGCACCTGGATCAGCTTGTAGTCTAG 2100 0.45 MKSLTVNTEDSFSSLLELASNNDFEGFKLLLDKEPSSINEVGLWYTRQNGSKQIVLEHRTPLMVAVTYGSIDVLKLILSCPEADVNFTCGVNKSTALHCAASGGSVNAVDVVKLLLLAGADVNSVDANGSRPVDVIVVHPKLQGMKAILEELLSDSASDGSVGDFSVPVSVNSSSSGSPARSSSVENGMPCSPSGSPPSSGASKFNEAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIPEELRPLYVSTGSAVPSPRSSSSAPNVMDMAAAMSLLPGSPSSVSSMSSSHFGQPMSPTANGISLSSAAWAQQNVPVLHSPGSNLHSSRLRSSLSARDIPLEDLNVLPDFDGQQHLMNDLSCFLQPHPGAVSRSKTLTPSNLEELFSAEFSSSPRYSDPAVASVFSPTHKSAIRNQFQQLQSRLSPINTNVLSPKNVDHPLLQASFGVSPSGRMSPRNVEPISPMSSRMSAFAQREKQQQQLRSLSSRDLGANNPASVVGSPVNTWSKWGSPNGKVDWSVNGDELGRQMQKLSPFEHKNNGEEPDLSWVQSLVKESPPEMIKEKLASSGPIASADGVNPNSQIESIDNSVLGAWLEQMHLDQLVV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02715 699 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Rops3g02715 699 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Rops3g02715 699 SUPERFAMILY Ankyrin repeat 9 158 IPR036770 -
Rops3g02715 699 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Rops3g02715 699 Gene3D - 2 167 IPR036770 -
Rops3g02715 699 MobiDBLite consensus disorder prediction 170 205 - -
Rops3g02715 699 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Rops3g02715 699 Gene3D - 278 340 - -
Rops3g02715 699 SMART ANK_2a 10 40 IPR002110 GO:0005515
Rops3g02715 699 SMART ANK_2a 57 87 IPR002110 GO:0005515
Rops3g02715 699 SMART ANK_2a 92 124 IPR002110 GO:0005515
Rops3g02715 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 302 IPR000571 GO:0046872
Rops3g02715 699 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Rops3g02715 699 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Rops3g02715 699 PANTHER UNKEMPT FAMILY MEMBER 17 650 IPR045234 -
Rops3g02715 699 MobiDBLite consensus disorder prediction 569 600 - -
Rops3g02715 699 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02715 Rops-Chr3 57551527 57555518 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g02715 Ank_2 8.1e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g02540 7 47421619 47425900 Rops3g02715 3 57551527 57555518 ECH
Rops3g02715 3 57551527 57555518 Rops3g02715 3 57551527 57555518 ECH
Rops3g02715 3 57551527 57555518 Rops7g02540 7 47421619 47425900 PCT