Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02705 ATGAGTGGTAGGATAAAGCCTGTTTCCGGAGGGAAAGATGCTATTAGCTCAGAATTTTCTTCAAAAATGCATGATCTTGATGATAATGGATGCAAACAAAAGAAGCTTGGAGATGATTTTGACTTGGTTTCCATTCCCAAATTATTGAAAGGGTTCAAGAAAAGAAAGTTTGGAAGTGACAGCAATAAAATAGAAACCCTTTGTGCTAAAAGATCAAAAACCCTGAAATATGGCACAGTGATGAATCCCAAATCTTCAGGTCTTAGTTCAGATGATGAAGATCATGGAGAAAGAAGGCACATTCATCTTAATGAGAAATCTGGGCAGAAAGAGCCAGCTAGAAGAATTCCTGTGAAAATTGTGATGGTTCAAGATGACATAGACAGCAGCACCCTAAAGGAGGAAGAGGTGAATCGACATCAAAGTAAAACAAACTTTTCTCCAGTAGGGGCTGACGTGATTCAAGGAAGTAATCTCAGAAAATTTGCAAGAAAGAAAGGATATGATCAAATTGAAACTGAAGATGAAAGAATGAATGATTTAGACAGCAAATCTCCAATGGAAAATATGGAATATAAGGACCTCAAAATCGATAATCAGATCCATGAATATGAATATGTCAATTCAAAACAAAATATGGTTGAAGATGATTTGACAGACTTGTGGAATGAAATGGCAGTTGGGTTAGAATGTAGCAAGGATGGTGTTGGAGATACCTCAATTGATGAGAAAGCAGAAGATGAAGGATGTGATCATTCTTTTATATTGAAGGATGATATTGGTTACGTATGTCGTGTTTGTGGACTTATCCAGACAGGAATTGAATCCATCTTCGAGTTTTCTTTCGATAAGGGAAAAAAGACTTCACGAACTTACATATCTGAATCTCGAAATTCAAGACATAAAGGATCAACCAAGATTTTACAAAGTGGATTTAAAACTTCTATGGAGGATTTAATGTCAACTGGAATATCTGCTCATCCAAGGCACATAAAGCAAATGAAACCTCATCAAGTGGATGGATTTAACTTTCTTTGTAGGAACCTCATAACAGTTGATCCAGGGGGTTGCATTCTAGCTCATGCTCCAGGTTCTGGAAAGACTTTTATGGTTATAAGTTTTATGCAAAGTTACCTTGCTAGATCACCCAATGCCAGGCCACTAGTTGTTCTACCAAAAGGAATCTTAGCTACATGGAAGAAAGAGTTTCAAACATGGCAAGTGGAGGACATTCCATTATATGAATTTTACTCGGTAAAAGCAGATAACCGCGCTCAGCAGTTGGATGTATTAAGGAAATGGGTGGAGCATAAAAGTATCCTATTTTTGGGATATAAACAATTTTCTACAATTATTTGTGACATGGGAACAGAAGCATCAGAGTGTCAAGAAATACTATTGAAAGTGCCTACAATACTTGTTCTAGATGAAGGTCACACTCCAAGAAACGAGGAAACTGATGTGCTTCAATCTCTTGCAAGAGTTCATACACCTCTTAAAATTGTATTATCAGGCACCCTTTACCAAAACCATGTGAAGGAGGTGTTTAATATTCTAAAACTTGTTCGACCGAGGTTTATGAAGTCACAAACTTCTCAAGCTATACGAAGGCGCATAATGTCCAGAGTGAAGATATCACATGTGAGAAACACTTCCATAGCTGGCTCAGAAATAGCATTCTTTAACTTGGTGGAAAAAACACTCCAACAGAAGGATGATTTCAAACTGAAAGCAGCTGTTGTAAATGATCTTCGTGAGATGACCAGCAAGATTCTTCATTACTATAAAGGTGACTTCCTTGATGAGCTCCCTGGTCTAGTTGATTATACTTTGTTACTCAATCTCAGCTCAAGACAGAAAAAAGAAGTTGAAAAGTTAAAACATTTGGATCATTTCAAGAGAACTTCTGTGGGAAGTCTCTTGTATGTGCATCCACAACTGAAAACTTTTTCAGAAAAGTTCCCCTTTAATGGAGAGAAGGGATTCTCCTTTGGTGATGAAAAGATGGATAACATGGTAAAAAGACTGAAACCAAGAGATGGAGCTAAAGCAAAATTCTTTATTAATATGTTGAACCTGTGTCATTCAGCTGATGAGAAGCTTTTGGTATTTAGTCAGTATATCCTCCCCTTGAAACTCTTTGAGAAACTGGCAATGAAGTTCAAAGGGTGGAGTCGTGATAAGGAATTGTTCATGATAACTGGTGATTCAAGCCATGAACAAAGGGAAAGGTCCATGGAACGTTTCAACAACTCTTCTAATGCTAAAGTTTTCTTCGGTTCAATCAAAGCTTGTGGAGAAGGAATTTCTTTGGTAGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCATCAGTAACTAGACAGGCCATTGGCCGAGCATTTCGGCCTGGTCAGAAGAGAAAAGTATACACATACAGGTTGATTGCTGCTGATTCACCTGAGGAAGAAGATCACAAAACCTGCTTCAGCAAGGAGTTGATTTCAAAGATGTGGTTTGAGTGGAATGAGAACTGTGGAAACCAACAATTTGAAATCAAGGCCATTGATATTGATGAATGTGGTGACCCTTTTCTGGAAAGTCCTTCCTTGAAGGAAGATATAAAGACCTTGTACAAGAGGTAA 2631 0.3774 MSGRIKPVSGGKDAISSEFSSKMHDLDDNGCKQKKLGDDFDLVSIPKLLKGFKKRKFGSDSNKIETLCAKRSKTLKYGTVMNPKSSGLSSDDEDHGERRHIHLNEKSGQKEPARRIPVKIVMVQDDIDSSTLKEEEVNRHQSKTNFSPVGADVIQGSNLRKFARKKGYDQIETEDERMNDLDSKSPMENMEYKDLKIDNQIHEYEYVNSKQNMVEDDLTDLWNEMAVGLECSKDGVGDTSIDEKAEDEGCDHSFILKDDIGYVCRVCGLIQTGIESIFEFSFDKGKKTSRTYISESRNSRHKGSTKILQSGFKTSMEDLMSTGISAHPRHIKQMKPHQVDGFNFLCRNLITVDPGGCILAHAPGSGKTFMVISFMQSYLARSPNARPLVVLPKGILATWKKEFQTWQVEDIPLYEFYSVKADNRAQQLDVLRKWVEHKSILFLGYKQFSTIICDMGTEASECQEILLKVPTILVLDEGHTPRNEETDVLQSLARVHTPLKIVLSGTLYQNHVKEVFNILKLVRPRFMKSQTSQAIRRRIMSRVKISHVRNTSIAGSEIAFFNLVEKTLQQKDDFKLKAAVVNDLREMTSKILHYYKGDFLDELPGLVDYTLLLNLSSRQKKEVEKLKHLDHFKRTSVGSLLYVHPQLKTFSEKFPFNGEKGFSFGDEKMDNMVKRLKPRDGAKAKFFINMLNLCHSADEKLLVFSQYILPLKLFEKLAMKFKGWSRDKELFMITGDSSHEQRERSMERFNNSSNAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEEDHKTCFSKELISKMWFEWNENCGNQQFEIKAIDIDECGDPFLESPSLKEDIKTLYKR* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02705 876 CDD SF2_C_SNF 682 811 - -
Rops3g02705 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 686 854 IPR001650 -
Rops3g02705 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 525 IPR014001 -
Rops3g02705 876 Gene3D - 304 563 IPR038718 -
Rops3g02705 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 838 IPR027417 -
Rops3g02705 876 MobiDBLite consensus disorder prediction 1 34 - -
Rops3g02705 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 549 IPR027417 -
Rops3g02705 876 SMART helicmild6 715 800 IPR001650 -
Rops3g02705 876 MobiDBLite consensus disorder prediction 18 34 - -
Rops3g02705 876 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 86 875 IPR044567 GO:0080188
Rops3g02705 876 SMART ultradead3 330 538 IPR014001 -
Rops3g02705 876 Pfam Helicase conserved C-terminal domain 685 799 IPR001650 -
Rops3g02705 876 MobiDBLite consensus disorder prediction 79 98 - -
Rops3g02705 876 MobiDBLite consensus disorder prediction 131 150 - -
Rops3g02705 876 Gene3D - 604 863 IPR027417 -
Rops3g02705 876 Pfam SNF2-related domain 354 623 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02705 Rops-Chr3 57382317 57387541 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops3g02705 SNF2_N 3.1e-20 CL0023