Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02702 ATGGAGTCAGCGGTTGATGTATTACCAACTAAACGCCCAGCTCATAGCGGAAGTTCTCCAGAGGTGCACAAAAGACTGAAGTTATCTAGTGATAGCCTGCCATACTCGGCACATGATAAAGTTGAACCAAAGACACCAAAGAATTCCTCAAATGTTGTAGAATACAGCAATCCATTCGCAATTGCTGATGTTATAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAATTCTGGGCCCTTACTTGGCAAAATATCCCAGACTCGTTAACCAGTTACCAGAAGTGGCAACAAATGATGATGAAGAAACTCCTAAGTTGGGAAATCAAAAAGTTACACGTATGTCAAATCAGAATGTAATAGATTTGGAGGGGGAGCACATTGAAAAAGATGTTCCTGCAGCACCAATGCCTGTTGTGATAATTGATTCAGATGAGGAAGATGATAGGGATCAAAAATATTTTCTTCCATTTCATGAAGTTGTGTTGCCAAAACCAGTTCAGTCTCCTGCATTGAAGACAATTGGGTATCATGCTCCCATTGCTTACCATGGAGATAGTGAAGATCTAAAATTTGATCCAAGTCCAGCTGGTAAAGAGATCACTAGGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGAAGATCATGAGGTTGATGCCAAAGAGGAGGATGGGCTCGAAGATATTTGGAGGGAGATGGCATTGGAAATAGAACGTTCTAAAGAAGTTTCTGTAGATCCTCCGCCTGAAGAAGAAGGGAAAAAAGATGCGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGTACAAGAACATATATGTCTGATTCGGGGAATGCTAGAGAAAAAGCTGATGTATTTGGACTTAAGATTACTGAAGATGATCTCATGGTAACTGACATCTCAACGCACCCTAGGCACATGAAGCTAATGAAACCTCACCAAGTTGAGGGATTCAATTTTCTTGTCAGAAACCTTGTTGGTGACCATCCCGGGGGCTGCATCTTGGCCCATGCTCCTGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATATTGTCAACTTGGAAAAAGGAGTTTCAAATATGGCAAGTGGAGGACATACCACTCTATGATTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTTGAAGTGTTGAAGCAATGGATGGAGACAAAGAGTATCCTTTTCTTGGGATACAAACAGTTCTCTTCAATTGTCTGTGAGAATGGTACTAACAGCATATCAACATCTTGCCAAGAGATATTGCTTAAGGTCCCTTCAATTCTCATTTTAGATGAGGGACACAATCCAAGGAATGAAAATACTGATATGGTACAGTCCCTTGCGAAAGTACAAACACCTAGAAAAGTTGTACTGTCAGGAACCCTGTATCAGAATCATGTCAGGGAGGTATTTAACATCTTAAATCTTGTGCGGCCAAAATTTTTAAAGACGGAAACATCTAGGCCTATTGTCAAGCGCATTCATAGTAGAATACATATACCTGGCATAAGAAGCTTCTTCGACTTGGTTGAGAACACTTTGCAGAAGGACACAGATTTTAAACGGAAAGTGGCTGTTATACGAGATTTGCGTGAGATGACAAGCAAGGTACTTCATTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTACTTAACCTTACCCCTAGACAGAAGCGTGAAACTGAGAAATTAAAGAAGCTATCTAGAAAGTTCAAGATATGTTCTGTAGGCAGTTCTGTCTATCTTCACCCTGAATTGAAATCTACAGCAGAAAATTGTGGTGAAAATTGTGTATCTGATTATAAAATGGATGATCTAATAAAGAATCTAAATGTGAAAGATGGAGTGAAGACAAAATTCTTTCTCAATGTGCTAAACCTATGTGAATCAGCTGGGGAGAAGCTTCTTGTGTTCAGTCAGTATCTCTTACCTCTGAAATATTTAGAAAGGTTAACTATGAAATGGAAGGGCTGGAGTCTTGGGATAGAAATTTTTGGGATCACGGGAGAATCAAATACTGAACAACGAGAGTGGTCTATGGAAAAATTTAACAATTCACCTGATGCAAAAATCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATCATTATCTTGGATGTTCATCTCAATCCATCAGTTACGCGTCAAGCTATTGGCCGTGCATTCCGACCAGGCCAGACAAAGAAAGTCTTTGTGTATCGACTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACACTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTACTGTGGCAATCGTGCTTTCGAAGTTGAGACAGTTAGTGTGAAAGAATGTGGTGATTTGTTTCTTGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAGAAGGTAG 2652 0.3974 MESAVDVLPTKRPAHSGSSPEVHKRLKLSSDSLPYSAHDKVEPKTPKNSSNVVEYSNPFAIADVINRLESGKFGSVTKDIEALITRKMQILGPYLAKYPRLVNQLPEVATNDDEETPKLGNQKVTRMSNQNVIDLEGEHIEKDVPAAPMPVVIIDSDEEDDRDQKYFLPFHEVVLPKPVQSPALKTIGYHAPIAYHGDSEDLKFDPSPAGKEITRRDKGVYVGVQEEEDHEVDAKEEDGLEDIWREMALEIERSKEVSVDPPPEEEGKKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSGNAREKADVFGLKITEDDLMVTDISTHPRHMKLMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMETKSILFLGYKQFSSIVCENGTNSISTSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKTETSRPIVKRIHSRIHIPGIRSFFDLVENTLQKDTDFKRKVAVIRDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTPRQKRETEKLKKLSRKFKICSVGSSVYLHPELKSTAENCGENCVSDYKMDDLIKNLNVKDGVKTKFFLNVLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGIEIFGITGESNTEQREWSMEKFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEEDHTTCFKKELISKMWFEWNEYCGNRAFEVETVSVKECGDLFLESPLLGEDVKALYRR* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02702 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 859 IPR001650 -
Rops3g02702 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 846 IPR027417 -
Rops3g02702 883 Gene3D - 615 871 IPR027417 -
Rops3g02702 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 545 IPR014001 -
Rops3g02702 883 SMART helicmild6 722 807 IPR001650 -
Rops3g02702 883 Gene3D - 321 564 IPR038718 -
Rops3g02702 883 CDD SF2_C_SNF 681 818 - -
Rops3g02702 883 Pfam Helicase conserved C-terminal domain 695 806 IPR001650 -
Rops3g02702 883 Pfam SNF2-related domain 372 600 IPR000330 GO:0005524|GO:0140658
Rops3g02702 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 565 IPR027417 -
Rops3g02702 883 SMART ultradead3 348 556 IPR014001 -
Rops3g02702 883 MobiDBLite consensus disorder prediction 1 50 - -
Rops3g02702 883 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 221 882 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02702 Rops-Chr3 57302885 57310094 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops3g02702 SNF2_N 1.1e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02702 3 57302885 57310094 Rops3g02702 3 57302885 57310094 ECH