Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g02658 | ATGGCAGCGAGTGGAATATTATTTGTTGCCTGTGGGGAACCACATTTATCACCAACAAATATTGCTTTTCTAAGATTTTTGAACCACACCATTTGGTCCATCAAGCAAAACATTGCTCACATTTTCTGCTCCCATCATGATGTCGTCACACATGCCAAGATTTGCTGTGAAGAGGATATGGCGCGATCATCTACCAAATATCGAATGTCAGCTATTGGGAGAAGGTGCCAACTAAACACACAAGATTGTTCATCATGTGACAAGAATTTTGGCGATGAGAATGGCAGACATGCTGTTTTCAATGTGTTAGATACTATGCTAAAGGATAGTTTAGAGCGTCTGAAGACGACGAGGGATAACATATTTTTGGTAAAGAGAGGTCTTCAGGGATATGCATGTGAATATAAATACACTGAACATGCTGCCACCATTAGGCGTTTGTGCTTGGAAGGTAAGTTGGAAACTGCTCTGTGGCTTCGGAGAAAAGTGGTGCTGAAGGGTATTCTTCCTGATGTGTTTACCCATAACCATATTGTAAATGGGTTGTGCAAAATTGGCCTTATGGAGAAGGCAGATTGGCTTGTTAGAGAGATGTTAGAATTTGGTCCTCATCCCAACTGCGCCACTTATAACACTTTAATTAAGGGATATTGTGCTGTTAATAGTGTAAATAAAGCTTTGCATCTGTTCTCCACCATGGCCAATACTGGTATTCAGCCAAACAGGATTACTTGCAACATTCTGGTACATGCATTGTGTGAGAAAGGTCTTCTGAAGGAAGCCAAAAAGATGCTTGACGAAATACTAAATGATGATGATGACAAAGATACACTTGATTTAGTTACCTCTACTATATTTATGGATAAATACTTTAAGAATGGAGCAATTAGTCAGGCTCTCAGTCTTTGGAATGAGATACTTCAAAAGTGTACAAGAGTAGATGTTGTTGCTTATAATGTTCTGATTAATGGGTTTTCCAAGAGTCAACAGATGAATCTTGCATATGGATATGCATGTGAGATGATTAAGAAAGGTCTACTTCCTGATGCTTTTACTTATAATATTCTTATTGGTGCTCTTTGCAAGCAAGGAAAAACTAGTGAAGCTTGCTATATTCTTGGAGTTATGTCTAAAATGGGAATTATGCCTGGTGAAATTTCATACAAGATTATGATTCAAGGCTTTTGCTTTGATGGAGATATTGTTAGAGCAAAAGACTTGCTTTGGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTTTAATATGGAACCAAATAATTGACTTTTATGGAAGATGTAAAGATCTTAGCAATGCATTTTTTACAAGAGATCAGATGCTGGCTTTTGGTGTTCGCCCCAATGTATTCACTTATAATGCTTTAATTCTTGCACAAGTGAAGAGTGGAAATATCTATGACGCTTTTCCTCTGAAGGAAGAGATGCTCTTAAAAGGTCTCTTTCCTGATGTGGTTACTTATAATTTGTTGATAGGTGCTGCTTGTAATTTAGGACGTATTGATTTTGCTCTTCAATTACTTGACGAGATGGTGCAAAGGGGGTATGAACCAGATATAATAACTTATACTGAACTTGTTAGGGGGTTCTGTATTAGAGGTGACATGAAAGAGGCAGAAGAACTTTATGCTAAATTACTGAAATCTGGTTTATTGAAGAATGATCATGTTCCAGTTCAGATTCTTTTTAATATGTACTGCAAATTGGAGGAACCAGTCATGGCGTTTAACTTTTATCAAGACTGGTTGTCAAGTCAAGTAAACGGGATAGTGATCCTCACTAAATTTCACATTATGCTTATGACTTGA | 1824 | 0.3745 | MAASGILFVACGEPHLSPTNIAFLRFLNHTIWSIKQNIAHIFCSHHDVVTHAKICCEEDMARSSTKYRMSAIGRRCQLNTQDCSSCDKNFGDENGRHAVFNVLDTMLKDSLERLKTTRDNIFLVKRGLQGYACEYKYTEHAATIRRLCLEGKLETALWLRRKVVLKGILPDVFTHNHIVNGLCKIGLMEKADWLVREMLEFGPHPNCATYNTLIKGYCAVNSVNKALHLFSTMANTGIQPNRITCNILVHALCEKGLLKEAKKMLDEILNDDDDKDTLDLVTSTIFMDKYFKNGAISQALSLWNEILQKCTRVDVVAYNVLINGFSKSQQMNLAYGYACEMIKKGLLPDAFTYNILIGALCKQGKTSEACYILGVMSKMGIMPGEISYKIMIQGFCFDGDIVRAKDLLWCMLNNLMVPKPLIWNQIIDFYGRCKDLSNAFFTRDQMLAFGVRPNVFTYNALILAQVKSGNIYDAFPLKEEMLLKGLFPDVVTYNLLIGAACNLGRIDFALQLLDEMVQRGYEPDIITYTELVRGFCIRGDMKEAEELYAKLLKSGLLKNDHVPVQILFNMYCKLEEPVMAFNFYQDWLSSQVNGIVILTKFHIMLMT* | 608 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g02658 | 607 | Gene3D | Tetratricopeptide repeat domain | 275 | 338 | IPR011990 | GO:0005515 | |
| Rops3g02658 | 607 | Gene3D | Tetratricopeptide repeat domain | 339 | 414 | IPR011990 | GO:0005515 | |
| Rops3g02658 | 607 | Pfam | PPR repeat | 166 | 198 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 206 | 240 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 241 | 271 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 349 | 383 | IPR002885 | - | |
| Rops3g02658 | 607 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 279 | 576 | - | - | |
| Rops3g02658 | 607 | Gene3D | Tetratricopeptide repeat domain | 424 | 597 | IPR011990 | GO:0005515 | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 454 | 488 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 171 | 205 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 524 | 558 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 419 | 453 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat family | 314 | 362 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat family | 205 | 253 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat family | 488 | 536 | IPR002885 | - | |
| Rops3g02658 | 607 | Gene3D | Tetratricopeptide repeat domain | 97 | 274 | IPR011990 | GO:0005515 | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 489 | 523 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 316 | 350 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 209 | 241 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 526 | 557 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 173 | 207 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 243 | 270 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 491 | 525 | IPR002885 | - | |
| Rops3g02658 | 607 | NCBIfam | pentatricopeptide repeat | 351 | 383 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat | 386 | 413 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat | 281 | 309 | IPR002885 | - | |
| Rops3g02658 | 607 | Pfam | PPR repeat | 456 | 485 | IPR002885 | - | |
| Rops3g02658 | 607 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 314 | 348 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops3g02658 | Rops-Chr3 | 56421935 | 56428653 | Dispersed |