Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02649 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCTTTGCATCAACAGAACCAACCCATTTCAACAGAACACCATGCCAATCTTCCTTTACCTTCATCAGCAGCTTCTCTAAGTGTTGGACTTGGCTTTTTCCCACTCCTAACTGCCACTCCTTGCATGCCACAATCTCAAAATAATGATGTTCAAGAATGTGATGACAACCCCAATTACTGGAACCTCAAGATGTGCCCCCCACAACAACAAATGAATTCATCAAGAAAAGGAGTGATGATCAATGTGGTGGAAGATGATGAAAGAAGCAAGAGCTTGATGGGGTGTGAGGAAAATGGTGTTGTTTATGGAAGTGACTTCAGGGTGTGTCAGGATTGTGGTAACAAAGCTAAGAAAGATTGTAGCCATAAAAGATGCAGGACATGTTGTAAGGGACGTGGTTTTGATTGTAGCACTCACGTGAAGAGCACGTGGGTCCCTGCATCACTGAGGAGAGATAGGAATATGGTGGTGGCTGATGGTGGTGGTTGTGGTGGTGGTGACAGTGATGGTGGCACTTCTTCTGGGGCTAAGAGGCAAAGGGTTTTAGGGTCATCACATAATGCTGCTGCTGCTGGTGGTGGTGGTGCTACCTCTCATAGTTCAACCTCTAATGCTACCACAACAAGGAGCTTGAGCTTAGATACCAGCTCTTGTCACCAAGATGCTGGTTTTAAACAATCTTTGCCACGCCATGTTCATGCACCTGCTGTGTTTAAGTGCCATAGGGTGTCTGCTATTGGCAATGGTGAAGATGAATTTGCATACTTAGCCACGGTTCATATTAGTGGCCATGTGTTCAAGGGGTTTCTTTATGATCAAGGTGTTGATGGGAAAAGTGAAATGCCTTGTGTGTCTGAACTGCAACTTGGAAACAATGGTGGTGGAAAGAGCAATAGGGAATGTTCTTCTGCAATTGGGGTTCCAACAACCAGTGCCTACCCTGCTTCTGCTTGCTGA 1008 0.4544 MSMLGLRDLVLIAQTPSSLHQQNQPISTEHHANLPLPSSAASLSVGLGFFPLLTATPCMPQSQNNDVQECDDNPNYWNLKMCPPQQQMNSSRKGVMINVVEDDERSKSLMGCEENGVVYGSDFRVCQDCGNKAKKDCSHKRCRTCCKGRGFDCSTHVKSTWVPASLRRDRNMVVADGGGCGGGDSDGGTSSGAKRQRVLGSSHNAAAAGGGGATSHSSTSNATTTRSLSLDTSSCHQDAGFKQSLPRHVHAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDQGVDGKSEMPCVSELQLGNNGGGKSNRECSSAIGVPTTSAYPASAC* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02649 335 NCBIfam LRP1 C-terminal domain 245 292 IPR006511 -
Rops3g02649 335 Pfam Domain of unknown function (DUF702) 125 293 - -
Rops3g02649 335 MobiDBLite consensus disorder prediction 177 225 - -
Rops3g02649 335 MobiDBLite consensus disorder prediction 211 225 - -
Rops3g02649 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 70 319 IPR007818 GO:0003700|GO:0006355
Rops3g02649 335 NCBIfam putative zinc finger domain, LRP1 type 125 166 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02649 Rops-Chr3 56207781 56212711 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops3g02649 DUF702 1.8e-53 No_clan