Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02590 ATGAGTCCTCCTGCTGAAACGAACATGGAAGATTCCAAGCCTTCGATTACCGTGGTCGATAATGGCGACCAAACTGAGTCTCGTTTCGCCGAGTTTTGCAAGAATGGGCTAGCATTTGATGAGAAAAGCTGTAAAGAAGCAATGAATCTGTTTGGAGAAACCAAACATCTTCTACTGACAAATGTTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTACTGGTTTGCTTTTATCTTATACTCTGTCAAGAAATTGACTCAAAAAAATGAGGAAAGTGGGAAGGAAGAGACTGAGAACACTGGGCTTACCTTGTGTCGCATATTGAGAGCAACTAAGCTTAACATTGCAGATTTCTTTAAAGAAATTCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGTAATCTATATGGCACAGATTGGGAAAGCAGGCTTGAGGTGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTGTTTGGAGAGTTCTTCGTGGCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCCGAATACCATCGGTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCTATCTTAATTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCATGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATTTATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATTTAATAGCAGATATATTAAAGAAGAAGCCCTGTTTGGCGTCTGAATGTGAAACTGAAAACCTAGAGATTTTTGATGGAGATGGTTTGACATATTTCAAAGATCTGATGGATGAATTGTCTCTGCCATCTAGTTTAAATATCTTAGAAAAAGATTACGATTACATGATTCGCAACAAGGGTGAACTTGATGAGAGGGTATTCATTAATGAGGACGACAGCCTGCTGGCTTCAGGAAGCTTGTCTGGAGGTTCTGTTTCTGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCCCATCGCTCTCCTGCATCTCATGCTAATGGCATTCCGGGCAGTGCAAATTCAAAGATGGCAGCCACCCCTGTAACCACGGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTGCATCAAAGCCCTCACCAGAGCTAGAGAGATTCTTGACATCATGTGACAGGGATGTTACAAGTGATGTGCTGCGCAGAGCGCAGATTATATTACAGGCTATATTTCCTAGTAGCCCTCTTGGGGAACGATGTGTAACTGGAAGCCTGCAAAGTGCGAACCTCATGGACAATATATGGGCCGAACAGCGAAGATTGGAAGCACTGAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAATACTTCATGCAACTAATTTAACTTCACTACTAACTAACGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTTCTGGCAACTCACAAGACTGTAACAATGTTATTCCCTGCAGTACTGGAGAGGACTGGAAGTACAGCTTTTGATCTTAGTAAGGTAATTAAGAGTTTCATTAGACATGAAGAATCTCTCCCGAGAAAATTGAGGCGACATTTGAATTCATTGGAAGAACGACTTTTGGAAAGCATGGTATGGGAGAAGGGTTCATCAATGTATATTTCTTTGGCAGTTGCTAGACCTTCCCTTTCTGCAGAAATCAATCGTCTTGGACTGCTAGCTGAACCAATGCCTTCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCTCCTGTGCCTTCCTTGCCTAAGCTTGAGACTTCACCAACTCAAAATGGGGATACCAGATCACCAAAGCGACTCTGTACAGAATATCGAAACGTGTTGGTGGAACGAAATTCTTTTACTTCACCAGTGAAAGACCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTCTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAAGTATCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGACATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATCATATACAACTACAGAAAGCAACCACAGTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCACGCCGTAATGGGGCATGTAAACAGAGAACAGGACAGGAACATGTCGACATCATTACATTTTACAATGAAGTATTTATTCCCACTGTAAAGCCATTGCTGGTTGAGCTTGGCCCTGGTGGAGCAACTATGAAAAGTGACCGAGTACCTGAAGTTAATAATAAAAATGATGGCCATTTAGCTCAATGTCCCGGGTCTCCTAAGATATCACCTTTCCCAAGCCTTCCTGATATGTCTCCGAAAAAAGTGTCTGCCACACACAATGTATATGTCTCTCCATTACGATCATCTAAGATGGATGCTCTAATATCACATAACTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACTTAACTGCCATCAACAACCGTTTGAATGGCAACCGGAAGGTGAGAGGCCCCCTCAATTTTGATGATGTTGATGTGGGTTTGGTTAGTGATTCCATGGTTGCAAACAGCCTCTATCTGCAGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3087 0.4221 MSPPAETNMEDSKPSITVVDNGDQTESRFAEFCKNGLAFDEKSCKEAMNLFGETKHLLLTNVSSMGNGTSEEAERYWFAFILYSVKKLTQKNEESGKEETENTGLTLCRILRATKLNIADFFKEIPQFVVKAGPILSNLYGTDWESRLEVKEMHANAIHLKILSKYYKRVFGEFFVATDANVEKNSSVTVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSSKGVDLLASLCNIYNTSEDELRKTMEKANNLIADILKKKPCLASECETENLEIFDGDGLTYFKDLMDELSLPSSLNILEKDYDYMIRNKGELDERVFINEDDSLLASGSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSANSKMAATPVTTAMTTAKWLRTVISPLASKPSPELERFLTSCDRDVTSDVLRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGSTAFDLSKVIKSFIRHEESLPRKLRRHLNSLEERLLESMVWEKGSSMYISLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPSLPKLETSPTQNGDTRSPKRLCTEYRNVLVERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQVSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARRNGACKQRTGQEHVDIITFYNEVFIPTVKPLLVELGPGGATMKSDRVPEVNNKNDGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHNSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQQNGSCASSSGAPLKSEQPDS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02590 1028 Gene3D - 195 353 - -
Rops3g02590 1028 Pfam Retinoblastoma-associated protein B domain 741 872 IPR002719 GO:0005634|GO:0051726
Rops3g02590 1028 Gene3D - 704 896 - -
Rops3g02590 1028 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Rops3g02590 1028 CDD CYCLIN_AtRBR_like 741 876 - -
Rops3g02590 1028 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g02590 1028 SUPERFAMILY Cyclin-like 424 618 IPR036915 -
Rops3g02590 1028 Coils Coil 268 292 - -
Rops3g02590 1028 Gene3D - 419 607 - -
Rops3g02590 1028 SMART DUF3452_2 88 234 IPR024599 -
Rops3g02590 1028 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Rops3g02590 1028 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 1026 IPR028309 GO:0006357|GO:0051726
Rops3g02590 1028 FunFam Retinoblastoma-related protein 1 419 607 - -
Rops3g02590 1028 MobiDBLite consensus disorder prediction 388 411 - -
Rops3g02590 1028 SUPERFAMILY Cyclin-like 739 915 IPR036915 -
Rops3g02590 1028 FunFam Retinoblastoma-related protein 1 691 908 - -
Rops3g02590 1028 FunFam Retinoblastoma-related protein 1 195 353 - -
Rops3g02590 1028 Pfam Retinoblastoma-associated protein A domain 416 616 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02590 Rops-Chr3 54385949 54394760 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Rops3g02590 RB_A 5.7e-62 CL0065