Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02521 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAAATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCAATGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTATTTCTGCAAGATCTATGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAAACCATGAATTCATTGCATTTAAAACATTGCGTACATAGCTATAATGTCTTTGACTTTCTGAGGGAGGTAGTCAGCAGAGTTCCTGATTACGGCCAAGGCCATGGCCATTCTGAGGCTGGAGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGCTGGTGATGATTGTATTGACATAGATGAAGAGGCTAGGAGGAGCAAGATGGTGCATGAGTTGAGCCACACTGGCAACACAGGTAGAGGAAGAGGTCGAGGTAGAGGAAGAGGACGTGGTCGAGGATCTCGAACTGCAGTAAGAGAGACGTATCATCAGGAAGCTGAATCTGAGCCTTGCTCTTCTGTTCAGCAAGGAAGCCAACATAACACAAATACAAGTGTGACAATACATAATGATTCTGAGTCAAAGGAGTCATCAAAGGATAATATCACAGTTCCTGTTGAAAGCTCTGAGCCACCCTGTAATATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGGCTAACACAGCTGTTAATCCCTCATTAGCTGTTAATCCCTCATTGCCTGAACCTCAAACAGAGAGCAAGCATGAAGAAATTCCGGGGTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGACTCTATGCAGCTTGCACACCTTGGTAGGAGAATAGAAGAGGATGAGGAAGATTATGATGAGGAAGGGTAA 879 0.4391 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVHSYNVFDFLREVVSRVPDYGQGHGHSEAGADDRAISKRRKAAGDDCIDIDEEARRSKMVHELSHTGNTGRGRGRGRGRGRGRGSRTAVRETYHQEAESEPCSSVQQGSQHNTNTSVTIHNDSESKESSKDNITVPVESSEPPCNIDLNANMNENDDKKANTAVNPSLAVNPSLPEPQTESKHEEIPGWSLSDVDKMAIDSMQLAHLGRRIEEDEEDYDEEG* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02521 292 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Rops3g02521 292 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 128 - -
Rops3g02521 292 MobiDBLite consensus disorder prediction 234 259 - -
Rops3g02521 292 MobiDBLite consensus disorder prediction 128 214 - -
Rops3g02521 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Rops3g02521 292 MobiDBLite consensus disorder prediction 168 192 - -
Rops3g02521 292 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Rops3g02521 292 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02521 Rops-Chr3 52135396 52142244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02521 1 281 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.164 3.73e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops3g02521 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02521 3 52135396 52142244 Rops3g02521 3 52135396 52142244 ECH