Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02458 ATGGAGGGAGGTAGTGCTGCAAAACGTAGAGCACCAGAAGCAAATGTTGAAGACAATGGCAATGAAGAAATATCTATCGAGGAACCCGAGATGAGAATATTCCACGATAGCATGCGATTGAAGAGGCTTAAAGAAGAAAGGAATCAGAAAGAGAATATGTTAAAGTTAATGGATGTTTGCAATGCTCAAGGATTTGCTTATGGCATTATTCCTAAGCAAGGGAAGCCAATAACTGGTGCTTCTGAAAATCTTCGCCTTTGGTGGAAGGAAACAGTCAAGTTTGATCATAATGCTTCTGTTGCAATAGGTAAGTATGAAGCTGGAGTTGGATTGGAAACTACTCACACATTGCATGAATTTCACAACACTAATCTTGGGTCACTTCTATCAACTCTAATGCACAATTGTAATCCACCCCAAAGGTGGTTTCCTTTGGAGGGTGGTGTTCCTCCACCATGGTGGCCTAAAGGAAATGAGGAATGGTGGTCTCAATTGGGCTTTGAGAAGGATCCAGGTCCTCCACCTTATAAAAAGCCTCATGATCTAAAGAAGGATTGGAAGGTTGCAGTTCTCACAGCTGTGATTAAGCACATATCTCCTGATTTTCAAAAGATAAGAAATGTTGTGCGCCAATCCAAGAAACTACAAGAGAAGATGTCTGCTGAGGAGGCTGCTGTTTTGGAGTCTGCTATAAATCATGAGGAATTGTTAGCTCAACACACAGCTGCAAAAAAGTTCCCAGATGGAAGTAGTGGGTCTTATGATGGGGATAGCAATGGTGATGGTGCAAATAATTTGCAAGGTCAAAACCAACCCCATAATGCTAATTTGGTTCAAATGGATACAAATGTTCCAACAAACAGCATTATTTTGAGGCCAATTCCTATAAGGAAAACTAGACCTCTTGGGGAAGGAATTTATACATGTGATCACTCTCAATGCCCTCATCATAATTACCATCTTGGGTTTCTTGACAAGGAGACAAGAAATCTTCACCAATTGAACTGTCCATACAAAAGGTTTCATTGTCATTGGGGTTGTGATGTTGCGGCGATTCCCCATAGGGAGTTGAATAATTTGTGCGTAATGTGGGGTGATTTCATAGCCAGTTTGTCTTTGTCGTTGAAGATCAGAGTGGTGGCGACATCACACACCGGTCGTATTCGTCGTCTTCGTGTTCATGTTTGTCTTCTTCGTCTTCGTATTCGTGTTCGTCTTGATTGGATGTTTCATCCATGGGTGAATAGATGTTACTGCCCTTCACATGATGTGGCCAAGAGAGCCTCACAAGATGGCCTTGAGGAATCTGAAATCCGAGTAACTGGCTTGCCTATTAGCTGTTCTTTTATCGATGTAGTTCTTGTTAAGGAATCGACTACAATGAGAAGGGAAGCTTTGACCAAATGCTTGTTGATGAACAATTCTGGTGGTGCCATTTCTCAATCCCCTGTGCCTGGAAAACCTATTGTCTCGACGCCTGCTACTAATATTAATATTGCAATGGACTTATGGAATGCATCTTCTCAAGGCCGGCACAATATAACAAGATTCCGCAATGTAACAAGATTCCGCAAAGCCCAATCTCCATGA 1590 0.4189 MEGGSAAKRRAPEANVEDNGNEEISIEEPEMRIFHDSMRLKRLKEERNQKENMLKLMDVCNAQGFAYGIIPKQGKPITGASENLRLWWKETVKFDHNASVAIGKYEAGVGLETTHTLHEFHNTNLGSLLSTLMHNCNPPQRWFPLEGGVPPPWWPKGNEEWWSQLGFEKDPGPPPYKKPHDLKKDWKVAVLTAVIKHISPDFQKIRNVVRQSKKLQEKMSAEEAAVLESAINHEELLAQHTAAKKFPDGSSGSYDGDSNGDGANNLQGQNQPHNANLVQMDTNVPTNSIILRPIPIRKTRPLGEGIYTCDHSQCPHHNYHLGFLDKETRNLHQLNCPYKRFHCHWGCDVAAIPHRELNNLCVMWGDFIASLSLSLKIRVVATSHTGRIRRLRVHVCLLRLRIRVRLDWMFHPWVNRCYCPSHDVAKRASQDGLEESEIRVTGLPISCSFIDVVLVKESTTMRREALTKCLLMNNSGGAISQSPVPGKPIVSTPATNINIAMDLWNASSQGRHNITRFRNVTRFRKAQSP* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02458 529 Gene3D - 112 245 IPR023278 GO:0003700|GO:0005634
Rops3g02458 529 Pfam Ethylene insensitive 3 26 235 IPR047091 GO:0003700
Rops3g02458 529 MobiDBLite consensus disorder prediction 252 271 - -
Rops3g02458 529 Coils Coil 43 63 - -
Rops3g02458 529 SUPERFAMILY DNA-binding domain of EIN3-like 114 237 IPR023278 GO:0003700|GO:0005634
Rops3g02458 529 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 341 IPR006957 GO:0003700|GO:0005634
Rops3g02458 529 MobiDBLite consensus disorder prediction 1 25 - -
Rops3g02458 529 MobiDBLite consensus disorder prediction 244 271 - -
Rops3g02458 529 Coils Coil 205 225 - -
Rops3g02458 529 Pfam Monogalactosyldiacylglycerol (MGDG) synthase 410 445 IPR009695 GO:0009247|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02458 Rops-Chr3 50663411 50670762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02458 12 347 EIL Transcription Factor Family AT3G20770 41.935 1.24e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Rops3g02458 EIN3 2.8e-82 No_clan