Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02400 ATGGCTGCCACTGTCACTGCTTCCTTTCACTTCCCATCTCCAATGCTTTCTTCTTCTTCTAATTCTCAACTTTGCCTCTCACCCTTTTGTGGAGTACCCCATTTGAAGAAAGGTTACCCTTTCACTTCCCAAACCGTTACTTCCCGCCAAATTAACAACAAAAGCCTCTCTTCAACGACCTTGCTTGTAACGGCTTCCAGTAACACACAACCCATGCTCCCTCCTTACAACGTTTTGATTACTGGGTCATCCAAAGGAATAGGGTATGCATTGGCAAAAGAGTTTCTAAAAGCTGGTGACAACGTCATCATTTGCTCGAGATCATATGAAAGGGTAGAGACTGCTGTCCAGAACTTGATAGTAGAATTTGGGGAGCAGCATGTGTGGGGCACTAAATGTGATGTGAGAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAACTGAAATACATTGATATATGGATCAATAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGCCGAGGCATCAGATGAGGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATAAAGATGATGGCGAACCAGCCCCGTGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCGACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTTAAAAATGTCATGGTGCATAATCTTTCGCCAGGAATGGTTACAACAGATCTTCTCATGTCTGGTGCTAATACAAAACAGGCAAAGTTTTTCATTAATGTATTGGCTGAACCAGCCGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCTATCCCTGCCAATGGATCAATGAAGCCAACATACATTCGGTTCCTCACTGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTAGCATTTGGGGCAAGAAGGAACCGGTACATTCTCGAAGATTGA 1038 0.421 MAATVTASFHFPSPMLSSSSNSQLCLSPFCGVPHLKKGYPFTSQTVTSRQINNKSLSSTTLLVTASSNTQPMLPPYNVLITGSSKGIGYALAKEFLKAGDNVIICSRSYERVETAVQNLIVEFGEQHVWGTKCDVRNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMANQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSMKPTYIRFLTGLKAYSQIFSRLAFGARRNRYILED* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02400 345 CDD SDR_c 78 299 - -
Rops3g02400 345 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 62 342 - -
Rops3g02400 345 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Rops3g02400 345 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Rops3g02400 345 PRINTS Glucose/ribitol dehydrogenase family signature 254 271 IPR002347 -
Rops3g02400 345 PRINTS Glucose/ribitol dehydrogenase family signature 77 94 IPR002347 -
Rops3g02400 345 PRINTS Glucose/ribitol dehydrogenase family signature 153 164 IPR002347 -
Rops3g02400 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 164 IPR002347 -
Rops3g02400 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Rops3g02400 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Rops3g02400 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 296 IPR036291 -
Rops3g02400 345 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 73 318 - -
Rops3g02400 345 Gene3D - 73 311 - -
Rops3g02400 345 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 217 245 IPR020904 GO:0016491
Rops3g02400 345 Pfam short chain dehydrogenase 78 273 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02400 Rops-Chr3 49062996 49072008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02400 28 270 Acyl Lipid Metabolism Gene Families AT1G24360 29.317 3.40e-16 76.6