Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02399 ATGCATAATCCAAAATCTGCAGTGTCTTTTCTGATATCACGTGCCAAGTCCCTTGAACTTCACCATCACCATCACTATCATCGCTGTGTTCCTTCAACTTCTTCAAGGGGGGCACTTTTCTTCTTAAAGTTTCAACCTTGGCTTTCTTCCTTTTCGAATGCCAAATCGTTAATCTCCACGCGCTTCTTCTCTAGCTACTACTCACTCGAGCAGTTCTCTGATGATGAATATGACTGTGATTTCGAGAACCACCAGGCATCGTCCACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGCTACGCAGTGAAAAGGATCAGGAGATTGTATCTAGAGACAAAAGAGATAGGAGGGATTATGAACAAATAGCTAACCTTGCCAAAAGAATGGGACTTTACAGTGAGATATTTGGAAAAGTGGTTGTTGCGAGCAAGGTGCCTCTTCCTAACTACCGGCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGTTTGCAAAGGAGGGTTGAAGGTTTGTTGCAGGAATACCTTGATAGGCTTCAGTTAAATTCTGAAAAGACAACTGACTATCTGGATGATGTGAAGTCCATGGATCAGGTGAAAAATATAGACTTGGATGAAAATGCTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTTCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCCGAAGGCAAGAAGATGCTGGAATTCCGGAAGTCTCTACCATCATTCAGGGAGAAGGAAGGTTTACTTCAAGCTATAGCACGTAATCAGGTGATAGTTATATCTGGAGAGACTGGATGTGGTAAAACCACTCAACTTCCTCAGTATGTATTAGAGTCAGAGATAGAGTCTGGTCGTGGAGCATTTTGCAGCATTATTTGCACACAGCCTCGAAGGATATCTGCTATGGCAGTGGCTGAGAGGGTGTCAGCAGAGAGAGGGGAGCCTCTTGGTGAAACAGTTGGTTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTATTTTGTACCAGTGGCATATTACTTCGAAGGTTGCTGAGTGATCGAAACCTGAATGGTATAACCCACGTTTTTGTGGATGAAATTCACGAGCGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTTCTTCCACGTCGTCGGGACTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCAAATTATTTTGGAAGTGCACCAATGTTTCATATTCCGGGTTTCACTTATCCTGTAAGAGCTCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAGTTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAAATGTGGAAAACACAAAAGCAGCTAGCACCGCGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTTTTTCTAAATCAAGCTTTGAGAACTATAGTTCCAGGACCCGTGATTCACTATCTTCTTGGGCACCTGACTGCATGGGATTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTGTTTAAGAGATCAGCTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGGTTCTTCTTCTAACATGTCATGGTTCAATGGCAACATCTGAACAGAAACTCATATTTGAAAAACCGCCTCCAAATGTGACGAAAATAATACTTGCTACAAATATGGCAGAGGCAAGTATTACAATCAATGATATAGTTTTTGTGATTGACTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAATACACCATGTCTACTACCTTCTTGGATATCTCAAGCATCTGCACGGCAGAGAAGGGGTAGGGCTGGCCGTGTGCAGCCAGGGGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCTTTTTCTGAATATCAACTTCCTGAACTATTGAGAACGCCCTTGAATTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAATTCTTATCAGCAGCTTTGCAGGCACCAGAGCCACGGGCTGTCCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAAAAAGAAACTCTGACCAATCTTGGGAAGTTTCTCTCCATGCTTCCTGTAGATCCCAAGCTGGGAAAAATGCTAATAATGGGAGCTGTATTTCGGTGCTTCGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCAGCTTACGAATACTGCTGGAGAAACTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGAAGCAGGCTTGGTAGATGCAGATGCAAGCATTATCAACAAATTGAGTCACAATCAGTCTCTTGTACGTGCAGTAATATGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAGACAATGGACGATGGCCAGGTTTTATTATATGCGAATTCGGTGAATGCACGTTACCAGACCATTCCTTACCCATGGTTGGTTTTTGGTGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTCAGTAGTGGGATACAGGCTGGGCATCTCAAAATGTTAGATGGGTATGTTGACTTCTTCTTGGATCCTAGTTTAGCTGACTGCTATTTGAAGCTTAAAGAAGAGCTTGATAAGCTTATCCAAAAGAAGCTAGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTATTTGGCCGCGATTGCCGGAAGCCTAAGGCCTCTAATGATGAGAATAAATTCACAAAAGATGGGACAAACCCAAAGAGCTTGTTGCAAACACTGTTGATGCGAGCAGGACACTCCCCACCAAAATACAAAACAAAACATCTCAAGACAAATGAGTTTAGGGCACTGGTGGAGTTTAAAGGAATGCAATTTGTTGGCAAACCAAAAAGAAACAAGCAGCTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTAACAACAATCAGAATGAAGATGATGATAACTCTCCTCCTGATGTCACTGACAACATGCTAAAACTACTAGGGAAGCGTAGAAAATCAAAGGGACGTTCTGGTTGA 3480 0.4233 MHNPKSAVSFLISRAKSLELHHHHHYHRCVPSTSSRGALFFLKFQPWLSSFSNAKSLISTRFFSSYYSLEQFSDDEYDCDFENHQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDKRDRRDYEQIANLAKRMGLYSEIFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSEKTTDYLDDVKSMDQVKNIDLDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGKKMLEFRKSLPSFREKEGLLQAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGSAPMFHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDAFSKSSFENYSSRTRDSLSSWAPDCMGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVTKIILATNMAEASITINDIVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKETLTNLGKFLSMLPVDPKLGKMLIMGAVFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDADASIINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSSGIQAGHLKMLDGYVDFFLDPSLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDCRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSNNNQNEDDDNSPPDVTDNMLKLLGKRRKSKGRSG* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02399 1159 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 878 959 IPR011709 -
Rops3g02399 1159 Gene3D - 1038 1126 - -
Rops3g02399 1159 FunFam DExH-box ATP-dependent RNA helicase DExH3 521 677 - -
Rops3g02399 1159 MobiDBLite consensus disorder prediction 1122 1159 - -
Rops3g02399 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 270 437 IPR014001 -
Rops3g02399 1159 FunFam Putative ATP-dependent RNA helicase DHX36 701 806 - -
Rops3g02399 1159 PANTHER ATP-DEPENDENT RNA HELICASE 215 970 - -
Rops3g02399 1159 SMART DRBM_3 1059 1122 IPR014720 -
Rops3g02399 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 699 IPR001650 -
Rops3g02399 1159 CDD DEXHc_RHA-like 276 436 - -
Rops3g02399 1159 Pfam DEAD/DEAH box helicase 271 421 IPR011545 GO:0003676|GO:0005524
Rops3g02399 1159 SUPERFAMILY dsRNA-binding domain-like 1052 1131 - -
Rops3g02399 1159 Pfam Helicase conserved C-terminal domain 528 658 IPR001650 -
Rops3g02399 1159 FunFam DEA(D/H)-box RNA helicase family protein 1040 1126 - -
Rops3g02399 1159 SMART ha2_5 721 812 IPR007502 GO:0004386
Rops3g02399 1159 Pfam Helicase associated domain (HA2) 722 808 IPR007502 GO:0004386
Rops3g02399 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 827 IPR027417 -
Rops3g02399 1159 Gene3D - 701 803 - -
Rops3g02399 1159 FunFam DExH-box ATP-dependent RNA helicase DExH3 213 438 - -
Rops3g02399 1159 Pfam Double-stranded RNA binding motif 1059 1121 IPR014720 -
Rops3g02399 1159 CDD SF2_C_RHA 507 667 - -
Rops3g02399 1159 Gene3D - 521 678 IPR027417 -
Rops3g02399 1159 SMART helicmild6 553 659 IPR001650 -
Rops3g02399 1159 Gene3D - 209 438 IPR027417 -
Rops3g02399 1159 SMART ultradead3 258 451 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02399 Rops-Chr3 49027002 49058716 Transposed