Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02322 ATGTCATTTTCCTGTGCCAAAAAATTTTTCAAGAGGTTTTGGGTTGATGAATTCCAAACAGGAAATTTTCCATATAGCAGCTTTTTGTCCAATGATATCTTACCATCCCTTGGAGCCAGAATCAACCAGGAAACTAGGCTTAGAAGATACATAATTTCACCTTTCAGTCCACGTTATAGGGCTTGGGAGATGTTACTGATTGTTCTAGTCATTTACTCTGCATGGATTTGCCCCTTTGAATTTGCCTTTCTGCCTTACAAGCAAGACACACTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATCATGCTCACATTCTTTGTTGCATATCTTGACAGCCATTCTTACCTTCTTGTTGATGATCCCAAGAAACTTGCAATCAGGTACATATCTACCTGGTTTATCTTTGATGTATGCTCAACTGCGCCTTTTCAATCCATTAGCCTCCTCTTCACTGATCATAGCAGTGAGATTGGCTTCAAAGTTCTTAACATGCTTCGGCTATGGCGTCTGAGACGAGTCAGCTCTTTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACTAGGTGCTCAAAGCTCATTGCTGTGACCTTGTTTGCTGTACACTGTGCTGGATGCTTTAACTATGTAATTGCAGATAGGTACCCTGATGTCAAAAGGACATGGATTGGTGCTGTGTACCCAAATTTTAAAGAATTAAGTGTTTGGGACAGATATGTGACAGCCATATATTGGTCCATTGTCACACTTACTACCACTGGCTATGGTGATTTGCATGCTGAGAATGTGAGAGAGATGTTATTTGACATCTTTTACATGTTGTTCAACTTGGGATTAACAGCATACATCATTGGAAACATGACAAACCTGGTAGTCCACTGGACAAGCCACACCAGAAATTTTAGAGATACAGTAAGAGCAGCTTCAGAATTTGCATCAAGAAACCATCTACCCCAAGATATACAAGATCAAATATTATCACACTTATGTTTGAGGTTCAAAACAGAAGGATTGAAGCAACAAGAAACAATAAATGGCATGCCAAAAGCAATTCGTGCAAGCATTGCATACCATTTATTTTTCCCAGTTGTGCAAAAAGCCTACATCTTCCAAGGAGTCTCACATGACTTTCTTTTCCAATTGGTTACAGAAATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTTATACTACAAAATGAGTCTCCAACAGATCTTTATATGCTGGTTTCAGGGTCAGTGGATATCATTCGTAATGTTGATGGTAATGATCAAGTTCTGAAGAAGGCAATTGCAATAGATACATTTGGAGAGATTGGAGTTTTATACAATAGACCACAGCCTTTCACTGTTCGGACCACAGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCATTGATGAATGCCTTACATGCAAATCCAGAAGAAGCACCACTTATAATGAAAAATCTTTTTATGAGGTTAAAGGGACAAGAATTGGGTTTTGAATATCCACCTACAGACCCAGGATTGGCTCTTCAAGAAATGCTTGAAGGGGACAACACAAGGAGAAGCTCTGGTCATACATGTACCAATATTCCTGATGATAGCAAAAGAAATCTTTATGCTACTGCACACAGATGTCATCCAGACATGTTTGAAATTCAGCTAGAAAAAGAAGCAAATGAAAAGAACCTAAGCCCCATAAGATGGAAACAGAAAGTTCAAGTAGACCAGCAACAACACAATAGCATGATGAATCTAGAAAATGGGAAGACATCAGATGAACATATCATAGAGTTTGTGGAGCCAGAAGTTCAGAGTCATGTTAAGAATGATCCAATCAGTAAAAGAAGAGAAGATGTTCTTAGTAGAACTATCAACTTTCCATTAGGAAAAGAATACACAAATTCCTATTCAAGTAGCATTAACCATCCAACTGGAAGAGAAGCTTCAATATCAGTCAATAGGAGAGTTACCATCCACTTTCTAAGCAAAGACAGAACTACCTTACAGGGACAGTATGGAAAGTTGATAACCCTGCCTGATTCATTGGAAGAGCTTCTCAAGATTGCTGGTGAAAAGTTTGGAGGATGCAAGCCTACAAAAGTAAGCAATGCAGAGAATGCAGAGATAGATGATATGAGAGTCATTAGAGATGGTGATCATCTCTTTTTTCTTTGCAGTGACACTTGA 2202 0.3883 MSFSCAKKFFKRFWVDEFQTGNFPYSSFLSNDILPSLGARINQETRLRRYIISPFSPRYRAWEMLLIVLVIYSAWICPFEFAFLPYKQDTLFIIDNIVNGFFAIDIMLTFFVAYLDSHSYLLVDDPKKLAIRYISTWFIFDVCSTAPFQSISLLFTDHSSEIGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYVIADRYPDVKRTWIGAVYPNFKELSVWDRYVTAIYWSIVTLTTTGYGDLHAENVREMLFDIFYMLFNLGLTAYIIGNMTNLVVHWTSHTRNFRDTVRAASEFASRNHLPQDIQDQILSHLCLRFKTEGLKQQETINGMPKAIRASIAYHLFFPVVQKAYIFQGVSHDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGSVDIIRNVDGNDQVLKKAIAIDTFGEIGVLYNRPQPFTVRTTELSQILRLSRTSLMNALHANPEEAPLIMKNLFMRLKGQELGFEYPPTDPGLALQEMLEGDNTRRSSGHTCTNIPDDSKRNLYATAHRCHPDMFEIQLEKEANEKNLSPIRWKQKVQVDQQQHNSMMNLENGKTSDEHIIEFVEPEVQSHVKNDPISKRREDVLSRTINFPLGKEYTNSYSSSINHPTGREASISVNRRVTIHFLSKDRTTLQGQYGKLITLPDSLEELLKIAGEKFGGCKPTKVSNAENAEIDDMRVIRDGDHLFFLCSDT* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02322 733 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops3g02322 733 Gene3D Helix hairpin bin 301 367 - -
Rops3g02322 733 FunFam Potassium channel KAT3 61 301 - -
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g02322 733 CDD CAP_ED 377 484 IPR000595 -
Rops3g02322 733 Pfam Cyclic nucleotide-binding domain 397 480 IPR000595 -
Rops3g02322 733 Gene3D Jelly Rolls 371 502 IPR014710 -
Rops3g02322 733 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Rops3g02322 733 PANTHER POTASSIUM CHANNEL AKT1 26 500 IPR045319 GO:0005249|GO:0006813
Rops3g02322 733 Gene3D - 60 300 - -
Rops3g02322 733 Pfam KHA, dimerisation domain of potassium ion channel 659 728 IPR021789 -
Rops3g02322 733 FunFam Potassium channel KAT2 365 501 - -
Rops3g02322 733 SMART cnmp_10 377 494 IPR000595 -
Rops3g02322 733 ProSiteProfiles KHA domain profile. 660 733 IPR021789 -
Rops3g02322 733 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Rops3g02322 733 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02322 Rops-Chr3 46792881 46799805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02322 1 728 Ion Channels AT5G46240 60.298 0.0 892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02322 3 46792881 46799805 Rops3g02322 3 46792881 46799805 ECH