Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02310 ATGGAAAATCACATCTACGCTTCCTACAGCCCTACCAACTACAGACTGGGAGGATTAGGAGTAGGACTTGGAGGAACTGGATCTTCCCCGACCCGATTATTTGACCTGGATACCATGTTCCTCTCTCACCACCACCACCACCACCGCACCGACGCCACCTCCGCCGCTCTTCGGTTCTCATCTTCCGCCGCCGACATCGACATTGGCCCACCAGGAGTAGCTTCTAGAATCCCCTCTTCAGCAACTGCCAACTTGCTCTCTCAACAGTCTGCTTGGCCCTCCGCCATTTCCGCCGCAAATGTCGGCCCTGCTGCCCTTGACCTGAAACGCTCTTCTGAAGCGCTCTACCATCCAACCATTTTGAGTACAATTGGGCAAAATGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGGTATGAAAGTGGAAGCAATATGCCTATGTATCCTCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGATACAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCATACTTTTTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGTTTCCACAGAAAATGCTGATGTTGGCTTACCTGAGAGGCCACTAGAGCCCCCTTGTGCGTTCTACGTGAAAACTGGAAGATGTAAATTTGGTGCTGCGTGTAAATTTCATCACCCCAAAGACATCCAGATTCAGGTGTCTGATGAACTGAGTCATACTGTTGAACAGACACAAATAAATCCTATATTGAAGGGGGCAGCAGGAGATACACAACCAATTCAGCATCTTATATCTCCATCGTTGCATAATAGCAAAGGGCTTCCTGTCAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCTCTTGCCGCTACAATCATCCTGACAGGAATGCAGTTAATCTGCCTATTGCTGGATTAGGCTCTTCTGTTTTGGCATCCTCAGCGGCTAATCTGAACATTGGATTTATTAATCCAGCCGCGTCTGTTTATCAAGCTTTTGACCCCAGGCTGTCAAATCCAATGTCTCAGGTGGGAATAGCAGAGACTACCTTCTATCCTCAGCGGCCTGGACAGATTGAATGCGATTACTATATGAAAACTGGCGAATGTAAATTTGGGGAAAGATGCAAGTTTCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAGCAGGCCCCACAACAGACTGTTAAACTCACCCCTGCTGGTCTTCCAAGAAGAGAGGGTGCTGCGATCTGTCCATATTATTTGAAAACTGGGACATGCAAGTTTGGAGCAACCTGCAAGTTTGACCACCCATCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCTACAACCAACGGAGGAGAAGAAGCAAAAAGCCAGTCATGA 1551 0.4707 MENHIYASYSPTNYRLGGLGVGLGGTGSSPTRLFDLDTMFLSHHHHHHRTDATSAALRFSSSAADIDIGPPGVASRIPSSATANLLSQQSAWPSAISAANVGPAALDLKRSSEALYHPTILSTIGQNEAWYSTNSLAKRPRYESGSNMPMYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNVDTSETLPERPGEPDCPYFLKTQKCKFGSRCKFNHPKVSTENADVGLPERPLEPPCAFYVKTGRCKFGAACKFHHPKDIQIQVSDELSHTVEQTQINPILKGAAGDTQPIQHLISPSLHNSKGLPVRLGEVDCPFYMKTGSCKYGASCRYNHPDRNAVNLPIAGLGSSVLASSAANLNIGFINPAASVYQAFDPRLSNPMSQVGIAETTFYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSLSKQAPQQTVKLTPAGLPRREGAAICPYYLKTGTCKFGATCKFDHPSPGEVMEMAKSQGTSTTNGGEEAKSQS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 463 491 IPR000571 GO:0046872
Rops3g02310 516 Gene3D - 409 505 - -
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 156 181 IPR036855 GO:0046872
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 211 232 IPR036855 GO:0046872
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 323 351 IPR000571 GO:0046872
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 410 438 IPR000571 GO:0046872
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 412 438 IPR036855 GO:0046872
Rops3g02310 516 FunFam Zinc finger CCCH domain-containing protein 37 113 191 - -
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 273 IPR000571 GO:0046872
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 413 436 IPR000571 GO:0046872
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 467 489 IPR000571 GO:0046872
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 349 IPR000571 GO:0046872
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 180 IPR000571 GO:0046872
Rops3g02310 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Rops3g02310 516 PANTHER PROTEIN PHOSPHATASE RELATED 315 367 - -
Rops3g02310 516 MobiDBLite consensus disorder prediction 495 516 - -
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 327 350 IPR036855 GO:0046872
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 154 182 IPR000571 GO:0046872
Rops3g02310 516 Gene3D - 244 357 - -
Rops3g02310 516 FunFam zinc finger CCCH domain-containing protein 37 408 504 - -
Rops3g02310 516 MobiDBLite consensus disorder prediction 497 516 - -
Rops3g02310 516 SMART c3hfinal6 463 490 IPR000571 GO:0046872
Rops3g02310 516 SMART c3hfinal6 154 181 IPR000571 GO:0046872
Rops3g02310 516 SMART c3hfinal6 410 437 IPR000571 GO:0046872
Rops3g02310 516 SMART c3hfinal6 323 350 IPR000571 GO:0046872
Rops3g02310 516 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Rops3g02310 516 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Rops3g02310 516 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Rops3g02310 516 FunFam Zinc finger CCCH domain-containing protein 37 192 239 - -
Rops3g02310 516 Gene3D - 111 190 - -
Rops3g02310 516 Gene3D - 191 242 - -
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 467 490 IPR036855 GO:0046872
Rops3g02310 516 SUPERFAMILY CCCH zinc finger 251 274 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02310 Rops-Chr3 46549688 46566512 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g02310 zf-CCCH 4.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02310 3 46549688 46566512 Rops3g02310 3 46549688 46566512 ECH