Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02294 ATGTTTGTTTATGGGGCATCATCATTGGACCCAAACTGGCTTCTTGGGTTTGTTGGTTTTACAGAAAAGAGAGCACCCGTTTCTGATCATAGCAACACCGAGTCATGGTCCCCTTTGTTCATGTTATTGGTAATTGTGATTGGGCTTGTGTTTTTGCACTTGTATCAATTGGCAGAGAAAAGAGAACCCAATTTCAATCCCAATACCAATGAGGTTGACCAAGAGGAGGACGAGGGGGAGCACCCCAATGGTGAATTAGACAATTGTTTTGATGGTGATCGGCAGCTCCGTCACCGGACTGCCACCGTGCACGGTGGAGCTTCTAGGAGACATGGTGGTTGTTCCTTCTGTGGCAATCTAAGCACTACAAGGTGTTCACGCTGCAAGGCTGCTAGATATTGCTCAATGGAGTGCCAAATTAGACATTGGAGGTCGGGTCATAAATATGAATGCTTCCAAACAGAGACTGATGATGCAGATCATGATGATGGAATCTCTATGCTTTTCGAGAAGTCCCAAAGGGAGAGTACCTCAAAGGGGTCCCATGGTGATGATGGAGTGGAGAGGAGTTTAGATGTGTCCAGTGGCAGTGATGTTAACAACTTTGATGGTTGTGAAGTATGTGGTAGCCCAAGTACCACAAAATGTTCAAGATGCAATGCCGTTACATACTGCTCACTAAAGTGCTTGCTTAAGAACTGGAGATTGCATAAATATCAATGCATTGCAGGGGATGTGGATTCAACTCCAACAGAAAGACCTCACAGAGATGTTGGAGTGATCAAGAATTCATATGAAGAGGAAAAGAATAATCATATGTCTAGTCCCCTTTATTTGGAGTTTCATCTAGAAGGAACCACAAATTTCAAGTCTGCAATTAAAGTATCACAGGATCCTACCAAGGAATCCCAGGTGCACAGAACTGATCAATGGGTTAGAATTGAGGATGAAGTAGCAAAGTCTAGGCAAGAGATTTCACTACTACAGTCAGAGCGTGAAGAGTGGAAGAAGAAAGCAAATTTTGCTAGAGAAAAATTTCAAAGCCTCAAGAAAGAATCTGAACACAAGTTGTTTGTGTTGAAAAAGGAAAAGGAATCAATATCAAATGCTGAGAAGAAAGCTTGCAATGTGATTCAAGGTTTACATAAGAGGCTAAACCACTTGCAGATTGCATTGCAAGAAATCATTGCTGAGAAGAAAAGGTTAGAAGAACATGTACAAATGGTAGAGAGTGAATGTGCTAAGCTAAAGAAAGAACTGCAAGAAGAGCATAAACATGCTCAATTTCTTAGAATGCAGTCTAACAAGAGTCATGAGACAACACAAATTGCCATAAGAGAAGTTGGAGTCGTAAGGCAAGAGCTTCAAGAAGTGCGTGAACAAGTCCAACGACTTAAAGAGAATTTTCTTAGAGATATTACATTTGCTGAATCTAGAGCTGCTTTTGCTGAGGCAAAACTCAGTGATCTTCAAAGGAAAATCAGATCGAAAGATTATAAGGTTCCTGTGGTGACAGACAATTTGGGCAGACTTGCTATGGCATGCACTATATGCCTGACCAATGAAAAAGACTTGGCCTTTGGTTGTGTACACATGACTTGCAGAGACTGTGGATCAAAATTATCAAAATATCCTATATGCCGCGAACAGATCACAAGTCATATCAGATTGTTTCCTGGTTGA 1683 0.4135 MFVYGASSLDPNWLLGFVGFTEKRAPVSDHSNTESWSPLFMLLVIVIGLVFLHLYQLAEKREPNFNPNTNEVDQEEDEGEHPNGELDNCFDGDRQLRHRTATVHGGASRRHGGCSFCGNLSTTRCSRCKAARYCSMECQIRHWRSGHKYECFQTETDDADHDDGISMLFEKSQRESTSKGSHGDDGVERSLDVSSGSDVNNFDGCEVCGSPSTTKCSRCNAVTYCSLKCLLKNWRLHKYQCIAGDVDSTPTERPHRDVGVIKNSYEEEKNNHMSSPLYLEFHLEGTTNFKSAIKVSQDPTKESQVHRTDQWVRIEDEVAKSRQEISLLQSEREEWKKKANFAREKFQSLKKESEHKLFVLKKEKESISNAEKKACNVIQGLHKRLNHLQIALQEIIAEKKRLEEHVQMVESECAKLKKELQEEHKHAQFLRMQSNKSHETTQIAIREVGVVRQELQEVREQVQRLKENFLRDITFAESRAAFAEAKLSDLQRKIRSKDYKVPVVTDNLGRLAMACTICLTNEKDLAFGCVHMTCRDCGSKLSKYPICREQITSHIRLFPG* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02294 560 Coils Coil 448 493 - -
Rops3g02294 560 ProSiteProfiles Zinc finger MYND-type profile. 205 241 IPR002893 -
Rops3g02294 560 Gene3D - 100 157 - -
Rops3g02294 560 Gene3D - 194 244 - -
Rops3g02294 560 MobiDBLite consensus disorder prediction 170 191 - -
Rops3g02294 560 ProSiteProfiles Zinc finger RING-type profile. 515 548 IPR001841 -
Rops3g02294 560 Coils Coil 318 352 - -
Rops3g02294 560 ProSitePatterns Zinc finger MYND-type signature. 205 241 IPR002893 -
Rops3g02294 560 FunFam Ubiquitin carboxyl-terminal hydrolase 15 106 155 - -
Rops3g02294 560 Pfam MYND finger 114 151 IPR002893 -
Rops3g02294 560 Pfam MYND finger 205 241 IPR002893 -
Rops3g02294 560 SUPERFAMILY HIT/MYND zinc finger-like 111 153 - -
Rops3g02294 560 Coils Coil 378 433 - -
Rops3g02294 560 SUPERFAMILY HIT/MYND zinc finger-like 202 242 - -
Rops3g02294 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 559 IPR013083 -
Rops3g02294 560 ProSiteProfiles Zinc finger MYND-type profile. 114 151 IPR002893 -
Rops3g02294 560 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 262 558 - -
Rops3g02294 560 MobiDBLite consensus disorder prediction 170 193 - -
Rops3g02294 560 MobiDBLite consensus disorder prediction 63 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02294 Rops-Chr3 46098421 46110209 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02294 114 151 Miscellaneous Gene Families AT4G31670 63.158 8.32e-10 59.7