Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02285 ATGCTTGCTAATGGAGCACTCTTGGATCTTAATTTCCTCAAGTTTATATTGATGATGATAGTACCCTTCTTAGGGTTGCTTGCTTGGATAGAAAACAAAGTACTCAATTCAAATGAAGTCAATCACAACCCAAATGGTGAGGAGTTCTTTGAACCCAACACCATATCTGGTGTTGATAGGGCATACTGTGCCTTCTGTGGCAAACTAAGCGACATAGTCACAAGATGCTCACGCTGCGAAAATGCTTTCTATTGCTCAAAGGTATGCCACGTCATGCACCAGAGATTTTGGCATGAATACGAATGCATTGAGATAGAGGCTGCAAAAGATAATGAGGGATCACCTTCTCATGAAACCCGTTGCCTTCTCTTGGAGCCTGAAAATGAAATATCTATGTACTCATTGGATGAAGTTGAGCAGGAAACAAATGAGGGAGATGTTTACTATATTGAAGGAGAAGAGCAAAACAGTGTTAAGTCCAATGAGAAAACAAGGCATGCAATTGTCAGTGGTTATGATGGCTGTGTTGTGTGTGGCAATCCAAGCTCCAAGAAATGTTCAAGATGCAAAGCTATAAAATACTGCTCACAAACATGCCAACATTTCGATTGGAGATCAGGGCATAAATTTCAATGTTTTGTTGCGAAGGAAAATTCAACTCAAGCAGAAATGGTTGAAGTGGCCACAAATTCAAATGAAGAGGAAGATAATACTCATTCATCTGATCCTCTTTGCCTGGAATTTTACTCAGAAGGAAACACCAATGACAAGGCTTTGATTTTAAGTTCTCAGGAAGCTACCTACAAATCCCAGAAGGAGGTTGAAGAACAACTAAGTAGCCTAAAAGAAGATTTGGAAAAGATTAAAAATGAGAATATATCACTACAAGCAGAGCGTAACTATTGGGAAATGAGAACAAGGTATTCAGCTGATAGACTTTACAGTTTCAGGAAAGAAAATGAACACCAGTTGTTTATTTTGAAGCATGAAAATGAATTGATATCAAATGCTGAGAAGCAAGCTCGTCAAATGGTTAAAAGTTTATCTAAGAGGCTACACTGCTTGCAGATTGAAGTTGAAAATGGAATTGCAGAGAGGAAAAAACAAGAAGAATATATACATATGCTACAGAATGAGTGTGCTGAGGCTAAGAGAGAGCTGCAAGAGAAGAACAAGCATGTTGAAAGGCTTACACTAAAGCTTGATAAGGCCACTCAATCTCCTCTGAGAATAGCTGAAGAGACAAGACAAAAATTAGCAATTGCTCCTAGGGAGATTGCTACTGTTGAACCTAGTGCTGCTGTTGCTGAGGAGTCCAAGACAATCAGTTTGAGCAGAAATCCAACCTTTACTAGACAGGGTTGTGCAATTTGCCTAACCAATGAGAAGGACATGGCCTTTGGTTGTGGGCATATGACATGTAGAGATTGTGGATCACAAATTCGCAAGTGTCACATATGCAGAAAGAAGATCACCAATCGTCTCAGGTTGTTCCCTGGCTGA 1503 0.3965 MLANGALLDLNFLKFILMMIVPFLGLLAWIENKVLNSNEVNHNPNGEEFFEPNTISGVDRAYCAFCGKLSDIVTRCSRCENAFYCSKVCHVMHQRFWHEYECIEIEAAKDNEGSPSHETRCLLLEPENEISMYSLDEVEQETNEGDVYYIEGEEQNSVKSNEKTRHAIVSGYDGCVVCGNPSSKKCSRCKAIKYCSQTCQHFDWRSGHKFQCFVAKENSTQAEMVEVATNSNEEEDNTHSSDPLCLEFYSEGNTNDKALILSSQEATYKSQKEVEEQLSSLKEDLEKIKNENISLQAERNYWEMRTRYSADRLYSFRKENEHQLFILKHENELISNAEKQARQMVKSLSKRLHCLQIEVENGIAERKKQEEYIHMLQNECAEAKRELQEKNKHVERLTLKLDKATQSPLRIAEETRQKLAIAPREIATVEPSAAVAEESKTISLSRNPTFTRQGCAICLTNEKDMAFGCGHMTCRDCGSQIRKCHICRKKITNRLRLFPG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02285 500 Pfam MYND finger 63 102 IPR002893 -
Rops3g02285 500 Pfam MYND finger 175 212 IPR002893 -
Rops3g02285 500 ProSiteProfiles Zinc finger MYND-type profile. 175 212 IPR002893 -
Rops3g02285 500 SUPERFAMILY RING/U-box 454 494 - -
Rops3g02285 500 ProSiteProfiles Zinc finger MYND-type profile. 63 102 IPR002893 -
Rops3g02285 500 Gene3D - 158 218 - -
Rops3g02285 500 Gene3D - 51 108 - -
Rops3g02285 500 ProSiteProfiles Zinc finger RING-type profile. 455 488 IPR001841 -
Rops3g02285 500 ProSitePatterns Zinc finger MYND-type signature. 63 102 IPR002893 -
Rops3g02285 500 SUPERFAMILY HIT/MYND zinc finger-like 60 104 - -
Rops3g02285 500 Coils Coil 271 298 - -
Rops3g02285 500 ProSitePatterns Zinc finger MYND-type signature. 175 212 IPR002893 -
Rops3g02285 500 Coils Coil 366 407 - -
Rops3g02285 500 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 230 498 - -
Rops3g02285 500 SUPERFAMILY HIT/MYND zinc finger-like 171 216 - -
Rops3g02285 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 499 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02285 Rops-Chr3 45958068 45969032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02285 175 212 Miscellaneous Gene Families AT4G31670 63.158 4.93e-10 60.1