Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02265 ATGGAAAGAATGTTCCCTCCCAAGAAGCCATCAACAATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGCCTTGTTCTCACCACTGACCCAAAGCCACGCCTCCGTTGGACTGTTGAACTTCATGAACGTTTTGTTGATGCTGTTGCTCAACTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTTAAGAGCCATCTTCAGAAATTCAGACTTGGAAAGCAGCCCCACAAGGAATTCAATGAACACTCTATTAAGGATGGTATGAGAGCTTCAGCTTTAGAACTGCAACGAAATACTGGCTCCTCGTCTTCTATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAGTTGAGGATTGAGGCTCAAGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCACACACTTGCAGGTGAAAACATGGCATCAGCTGCTACAAATTTAAAGGGTATTGGAACTCAAGGCATCCCTGACATGGGGGTAATGAAAGAATTTGGTGCCCCTCCTCTTAATTTTCCTCCATTTCAAGATCTTAACATTTATGATAATGGTGGTGACCAAATTGATCTTCAACAAAACATGGAGAGGCCACTCCTTGATGGGTTTATGCCAACTAATGAAAATTTGTTTCTGGGGAAAAAAAGGCCTAACCCTCATAGTGGGAGTGGAAAGAGCCCATTGATTTGGAATGATGATCTCAGACTTCAAGATTTGGGAACAGCTTCATCATGCATTAGCCCTCAAGATGTTCCTTTCAAAGGTGAACAGATTCAGATTGCACCACCATCAATTGATAGAGGTGCTAACAGTAATCCCATGTCTGAGATCTATGACAACAAGCCAGTACTTCAGGGAGAAATTGTAGGTGATAAGAAATTTGATTCATCTTTAAAGCTTGAAAGGGCATCACCAAATAGAGCACCTCTTCAAGGAGAAAGGATGAGTCCTATGATCAATACTGGTACCATGGCACAAGGTAGAAGCTCACCATTTGGTTGA 1104 0.4293 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEHSIKDGMRASALELQRNTGSSSSMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMASAATNLKGIGTQGIPDMGVMKEFGAPPLNFPPFQDLNIYDNGGDQIDLQQNMERPLLDGFMPTNENLFLGKKRPNPHSGSGKSPLIWNDDLRLQDLGTASSCISPQDVPFKGEQIQIAPPSIDRGANSNPMSEIYDNKPVLQGEIVGDKKFDSSLKLERASPNRAPLQGERMSPMINTGTMAQGRSSPFG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02265 367 MobiDBLite consensus disorder prediction 350 367 - -
Rops3g02265 367 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Rops3g02265 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 184 IPR044848 GO:0003700
Rops3g02265 367 MobiDBLite consensus disorder prediction 334 367 - -
Rops3g02265 367 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g02265 367 FunFam Myb family transcription factor 34 92 - -
Rops3g02265 367 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Rops3g02265 367 Gene3D - 34 92 - -
Rops3g02265 367 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Rops3g02265 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Rops3g02265 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02265 Rops-Chr3 45047057 45050014 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops3g02265 Myb_DNA-binding 5.1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02265 3 45047057 45050014 Rops3g02265 3 45047057 45050014 ECH
Rops7g01814 7 28810762 28812891 Rops3g02265 3 45047057 45050014 PCT