Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02218 ATGGAGCTCACAATTTCACACAGACCAAACCCACTTTTAGTTTCATCATCACCACTCACCCCAACTTCTCAAAATCTCAACTTTTTCACTTTAACGGCATCACCTCACAACCGCCGCAAAAAGCTCAAGTTTCGAGCTTCAGCGACCGCAGACCCAAATGGCGCTGATGGGTCTTCTTGGTTCCGACCATTGGAACGTGCTTCGAGGAGGTGGTTCTTGTCGAAATTTGGGGATATTGTGAAGAACATGGAAGAGGGTGGTGTGAAGGTTGGTGAGTTTGTGGAAGGTGTGAAGAACAGTGGAAATGAGTTGGGAAGGGTTGGAACTCGTTCGGTGTCTCAGTTTGTTGATTGGAATCGGTGGGAACGTTGGAAGAATCTCAAGGACTGGGAACCTAAGCGAATTGGTGCATTAATTCTTTATATCTTGGTTGCGGCATTTGCTTGTAGAGGAGTTTATGTAGCAATTCAAACACCTTATCTAAATCGCCAGAAAAAAGAATTGACTGAAGCTTACATGGAAGCGTTAATTCCTGAGCCATCCCCCAGTAACATTAGAAGATTTAAGAAGGGTATGTGGAAGAAGACAATGCCGAAAGGCCTGAAAATGAAAAAGATTATTGAAAGACCTGATGGAACACTTGTTCATGATACTACTTATGTTGGAGAGGATGCATGGGAGGATGATCAAGGAGCTCCTGAGGAACGTGTAAAACACATTATAGAGGATGATGAAAGGTTAAACAGAGAAGAGAAGAAAGAACTAACCAAAGACTTGGGCATTTCAGGTGAAGTTCAAACTGAGGGCACTTGGCGTGAGAGACTTCATAAATGGAGGGAGATCCTTAGAAAAGAACGTCTTGTTGAGCAATTGGATTCCTCGAATGCCAAATATGTAGTTGAGTTTGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGCGACAACCACTCAAGGAACAAGGGGTCTGTGGATAGCTAAGAGATGGTGGCAGTATCGTCCTAAACTTCCTTACAATTATTTCCTTGACAAACTTGATAGTTCTGAGGTAGATGCTGTTGTCTTTACTGAAGACTTGAAAAGATTGTATGTGACAATGAAAGAAGGTTTTCCATTGGAATTTGTTGTTGATATCCCTCTTGATCCTTATCTGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTCCTTCAGAAAAAACAGATCCATTATTTTATGAAGGTTGTGATTGCATTAGTACCTGGAATACTAATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTACATATCACTTCCAAACGTTTTCTTTACAAAAAGTATAATCAAATCTATGACATGGCACATGCAGAAAATTTTATTCTGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTACAAGGAAGTTGTGTTGGGTGGTGATGTTTGGGATCTTCTTGATGAGTTGATGATCTATATGGGAAATCCTATGCAGTTCTATGACAAGGATGTGCAGTTTGTCCGGGGTGTTCTACTCTCTGGACCTCCAGGAACAGGAAAAACACTTTTTGCCAGGACACTTGCCAAAGAAAGTGGACTGCCTTTTGTTTTTGCTTCTGGTGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGGATTAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCATGCTTTGTATTTGTGGATGAAATAGATGCCATTGCTGGAAGACATGCTAGGAAAGATCCACGTAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGACGGAGAGAAGGAAAAAACTGGTGTTGATCGTCTTTCCCTCAGACAAGCTATCATATTCATCTGTGCAACAAATAGGCCAGATGAATTAGATCTTGAATTTGTTCGATCTGGACGTATTGATCGTCGTCTATACATTGGTTTGCCTGATGCAAAACAAAGAGTCCAAATTTTTGGTGTGCATAGTTCTGGAAAGCAACTGGCAGAGGATGTGAATTTCGAAAAGCTTGTCTTCCGAACTGTTGGATTCTCTGGAGCGGATATAAGAAACCTTGTCAATGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGACATTGTTGATGTACTAGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTCACTGAGGAAGAGCAACAGAAAGTTGAAGAAAGTGTATCTTTTGAAAAGAAGAGATTGCTTGCTGTCCATGAAGCTGGTCATGTTGTACTTGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTACCTGGTGGTAAGGAAACTGCAGTATCTGTATTCTACCCTCGAGAAGATATGGTAGACCAAGGTTATACAACATTTGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTGTTGTATTTGGTGATGATATAACTGATGGAGGAAGAGATGATCTAGAAAAGATAACAAAGATTGCTAGGGAGATGGTGATCAGCCCTCAAAATTCAAGGTTGGGGTTACTAGGTTTAACAAAAAGGGTTGGCTTAGTTGATCGACCAGACAGTTCAGATGGCGAGTTGATAAGATACAGATGGGACGACCCTCAAGTAATTCCTGCTAATATGACACTAGAGGTGTCTGAGCTCTTTACACGGGAGTTGACAAGGTACATTGAAGAAACTGAAGAACTTGCAATGAATGCTTTGAGGGATAATAGGCACATCCTGGACTTAGTTGCAACGGAACTATTGGAGAAGTCAAGAATAACTGGATTGGAGGTTGAAGAAAAATTGAAGGGACTATACCCAGTAATGTTTGAGGACTTTGTGAAGCCATTCCAGATAAACTCAGAACAGGAGGGACCATTTCCGCATAATGATCATGTACGGTATCGGACACCGGATTTATATCCTGCTCCTTTCCATAGATCTTGA 2970 0.4148 MELTISHRPNPLLVSSSPLTPTSQNLNFFTLTASPHNRRKKLKFRASATADPNGADGSSWFRPLERASRRWFLSKFGDIVKNMEEGGVKVGEFVEGVKNSGNELGRVGTRSVSQFVDWNRWERWKNLKDWEPKRIGALILYILVAAFACRGVYVAIQTPYLNRQKKELTEAYMEALIPEPSPSNIRRFKKGMWKKTMPKGLKMKKIIERPDGTLVHDTTYVGEDAWEDDQGAPEERVKHIIEDDERLNREEKKELTKDLGISGEVQTEGTWRERLHKWREILRKERLVEQLDSSNAKYVVEFDMKEVENSLRKDVAEKATTTQGTRGLWIAKRWWQYRPKLPYNYFLDKLDSSEVDAVVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYLFEIITSSGVEVDLLQKKQIHYFMKVVIALVPGILILWLIRESVMLLHITSKRFLYKKYNQIYDMAHAENFILPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYDKDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRLSLRQAIIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSSGKQLAEDVNFEKLVFRTVGFSGADIRNLVNEAAIMSVRKGHSKIFQQDIVDVLDKQLLEGMGVLLTEEEQQKVEESVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERVVFGDDITDGGRDDLEKITKIAREMVISPQNSRLGLLGLTKRVGLVDRPDSSDGELIRYRWDDPQVIPANMTLEVSELFTRELTRYIEETEELAMNALRDNRHILDLVATELLEKSRITGLEVEEKLKGLYPVMFEDFVKPFQINSEQEGPFPHNDHVRYRTPDLYPAPFHRS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02218 989 Gene3D Peptidase M41 732 946 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops3g02218 989 Gene3D - 467 648 IPR027417 -
Rops3g02218 989 PANTHER ATP-DEPENDENT PROTEASE 123 963 - -
Rops3g02218 989 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 463 648 - -
Rops3g02218 989 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 649 720 - -
Rops3g02218 989 SUPERFAMILY FtsH protease domain-like 741 953 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops3g02218 989 Gene3D - 649 720 - -
Rops3g02218 989 Pfam AAA+ lid domain 669 709 IPR041569 -
Rops3g02218 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 717 IPR027417 -
Rops3g02218 989 SMART AAA_5 506 649 IPR003593 GO:0016887
Rops3g02218 989 Pfam Peptidase family M41 739 940 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops3g02218 989 Pfam ATPase family associated with various cellular activities (AAA) 510 646 IPR003959 GO:0005524|GO:0016887
Rops3g02218 989 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 732 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02218 Rops-Chr3 43985660 44034026 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02218 3 43985660 44034026 Rops3g02218 3 43985660 44034026 ECH