Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02214 ATGGAAGATTTAAACAGTTGGCTATCCTTCTATATGAATGAAAGTGTCAGCCATGATTTTGCCATAAGAAGGTTTTGCCCTGCAAGAATGGAGCAAGAGCAAGGAGAGTGCCAAGACCAAGAGGCAGCAGTGCATGATGATATTGAATTATGTTTTTCTGATGCTACCAGCACTCCTTGTTTGGCTTCTTCAGAGGTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAGTATGAGTATGACAATGAAGATCAACAGTCCCAAAAGAAGCATCAAAGTTTTGATCACTTTGTGGTGAATGAAGAAGATGATGCTGATGCATACTCCATGGTGAATGATGTCATTGGATATGTTCCAACCGCCATGGAGGATGAAGAATTGGAGATCTATGAAAATGTCACAATTTCCATGGAGGAGGAAGAAATTGAAATAAGTGGCTCTTTTGGTGCTATACCTGAGCTTGTGCCTTGTGCAGAAGAGGCAAACCTTGGTATTGACCAAGGTTTAGACTTGGTTCACATGCTGTTGGCATGTGCTGAAGCTGTAAGCTGCAGAGACACCCATCAAGCAGAGTTGCTGCTAATAAAAATTTGGGCATTGGCAAGTCCTTCAGGAGATTCATTGCAGAGAGTCTCATACTGTTTTGCCACAGGATTGAAGTGTAGGTTGTCACTTCTTCCTCCTAATATCAATGCAAATGGTACATTCATAAGTACTGCTATGGATGTTCCTTTGATCACTACGGAGAATAAGTTGGAAGCTTTTCAGCTTCTTTACCAAACCACACCTTACATTGCTTTTGGTTTCATGGCTGCAAATGAAGCTATCTGCCAAGGATCAAAAGGAAAAAGTTCCATACACATAATTGATCTAGGAATGGAGCATACCCTTCAATGGCCTTCCCTTATAAGGGCCCTTGCTTCTAGACCTGAGGGGCCTCCAAAGCTCAAGATCACAGGTTTCATCAACAATAAAGACAACCCAAAACTTCAAACTAGCATGAATGTGCTTGTGGAGGAAGCATTTTCATTGGGAATACCTCTTGAATTCCACATAATATCTGAGCCTGCAAGCCCTTCTCTCCTTACTAAGGAGAAGCTGAACTTGAGAGAAGGTGAAGCTTTATTTGTCAATAGCATCTTGCAGTTGCACAAATATGTCAAAGAAAGTAGAGGCTATCTTAAGGCAATTCTCCAATCAATAAAGAAGCTGGGTCCAACAGCACTTACAGTGGTTGAACAAGACACAAACCATAATGGTCCTTTCTTCCTTGGGAGATTTTTGGAATCACTGCACTATTACTCAGCCATGTTTGATTCTCTTGAGGCAAGTATGCCAAGAAATAGCCCACAAAGGAAGAAAATAGAGAGATTACACTTTGCAGAGGAAATTCTTAACATTGTAGCTTATGAGGGTCCAGATAGAATGGAAAGACATGAAAGGGTAGATCAATGGAGAAGACAATTAGGCCGTGCAGGATTTCAGGTAATGCCATTGAAGTGCACAAGCCAAGCTAGAATGATGCTTTCTGTTTATGATTGTGATGGATATACATTGTCAAGTGAGAAGGGTTGCCTTCTACTTGGGTGGAAAGGAAGGCCAATAATGATGGCTTCTGCATGGCAACTGGCAAATGTGTGA 1644 0.4136 MEDLNSWLSFYMNESVSHDFAIRRFCPARMEQEQGECQDQEAAVHDDIELCFSDATSTPCLASSEVDDFVDSFINMDQYEYDNEDQQSQKKHQSFDHFVVNEEDDADAYSMVNDVIGYVPTAMEDEELEIYENVTISMEEEEIEISGSFGAIPELVPCAEEANLGIDQGLDLVHMLLACAEAVSCRDTHQAELLLIKIWALASPSGDSLQRVSYCFATGLKCRLSLLPPNINANGTFISTAMDVPLITTENKLEAFQLLYQTTPYIAFGFMAANEAICQGSKGKSSIHIIDLGMEHTLQWPSLIRALASRPEGPPKLKITGFINNKDNPKLQTSMNVLVEEAFSLGIPLEFHIISEPASPSLLTKEKLNLREGEALFVNSILQLHKYVKESRGYLKAILQSIKKLGPTALTVVEQDTNHNGPFFLGRFLESLHYYSAMFDSLEASMPRNSPQRKKIERLHFAEEILNIVAYEGPDRMERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTLSSEKGCLLLGWKGRPIMMASAWQLANV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02214 547 Pfam GRAS domain family 172 543 IPR005202 -
Rops3g02214 547 ProSiteProfiles GRAS family profile. 163 543 IPR005202 -
Rops3g02214 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02214 Rops-Chr3 43940565 43942208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02214 167 547 GRAS Transcription Factor Family AT1G66350 38.701 4.59e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g02214 GRAS 3.9e-109 CL0063