Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02172 ATGGCAAGAGCAGCTTCCAATCACCTTCACCTTGTTCCAAGTTTAGTTCATCCATTGAAATCAACTTTCTTCAGAAATAACACTCTTTTTACTAAACACTCTCACTTTTATGGGGTTCAGCCAAGATTCTCTTTTTCTTCTTCATCATCCAAGATAAGCATGAGCCTCAGGGCTGGTATTGTTGGTCTACCAAATGTTGGCAAGTCCACACTCTTCAATGCAGTTGTTGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCTTTTTGTACCATAGAGCCAAATGTAGGGATTGTTGCCGTTCCAGATTCTCGTCTCCATGTACTGTCTGATCTCAGTAAATCTCAACGAGTGGTTCCAGCATCCATAGAATTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGCTGGGCAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTTTCAGACTTGGATCAGATTGAGAAAAGAATGGATAAACTAAAGAAAGGCAAGGCAAAGGATTCACAATCTAAACACAAGGAAGAGGCAGAAAAGAATGCATTGGAAAAGATTTGTGAGGCACTCATGGATGGAAAACCTGCACGATCTGTGACCTTAACAGATCTTGAAAAGGATGCTATAAAGCATCTCTGCTTGCTCACAATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGATGTCACAAATGTTGCATCTGAGTTGCAGTCAGGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAATTGAAGAGAGACAAGAATATCTGAAATCTCTTGGTGTTAGTGAAAGTGGTCTAGGGAACCTAATTAGGGCAACCTATAGCCTTTTGGGGCTGCGGACTTATTTTACTTCTGGTGAGAAGGAGACAAAAGCATGGACAATACTTGCTGGAATGACTGCGCCTCAATCTGCTGGAGTTATTCACTCTGACTTCGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCATATGAAGACTTTGTTGCTGCTGGTTCACTTGCTGCAGCACGAGAAAAAGGACTTTTGAGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGATGTCATGTTGTTTAGATTCAATGTTTAG 1272 0.4088 MARAASNHLHLVPSLVHPLKSTFFRNNTLFTKHSHFYGVQPRFSFSSSSSKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRMDKLKKGKAKDSQSKHKEEAEKNALEKICEALMDGKPARSVTLTDLEKDAIKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVASELQSGIVTISAQVEAELTELPIEERQEYLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQSAGVIHSDFEKGFIRAETVSYEDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02172 423 PANTHER OBG GTPASE FAMILY 48 422 - -
Rops3g02172 423 CDD YchF 58 337 IPR041706 -
Rops3g02172 423 FunFam Ribosome-binding ATPase YchF 326 422 - -
Rops3g02172 423 Pfam Protein of unknown function (DUF933) 339 422 IPR013029 -
Rops3g02172 423 CDD TGS_YchF_OLA1 337 421 IPR013029 -
Rops3g02172 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 361 IPR027417 -
Rops3g02172 423 SUPERFAMILY TGS-like 339 420 IPR012676 -
Rops3g02172 423 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 56 338 IPR031167 GO:0005525
Rops3g02172 423 FunFam Ribosome-binding ATPase YchF 167 257 - -
Rops3g02172 423 Gene3D - 102 422 IPR012675 -
Rops3g02172 423 PRINTS GTP1/OBG GTP-binding protein family signature 58 78 IPR006073 GO:0005525
Rops3g02172 423 PRINTS GTP1/OBG GTP-binding protein family signature 141 159 IPR006073 GO:0005525
Rops3g02172 423 PRINTS GTP1/OBG GTP-binding protein family signature 80 98 IPR006073 GO:0005525
Rops3g02172 423 PRINTS GTP1/OBG GTP-binding protein family signature 124 139 IPR006073 GO:0005525
Rops3g02172 423 NCBIfam redox-regulated ATPase YchF 54 423 IPR004396 GO:0005524|GO:0005525|GO:0016887
Rops3g02172 423 Gene3D - 56 338 IPR027417 -
Rops3g02172 423 Gene3D - 167 257 IPR023192 -
Rops3g02172 423 Pfam 50S ribosome-binding GTPase 58 170 IPR006073 GO:0005525
Rops3g02172 423 Hamap Ribosome-binding ATPase YchF [ychF]. 55 423 IPR004396 GO:0005524|GO:0005525|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02172 Rops-Chr3 42300734 42307163 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02172 3 42300734 42307163 Rops3g02172 3 42300734 42307163 ECH