Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02038 ATGGCCATGGATCCTACAAAGAAGCGCAAGCTCGATGAGAACGGCTTCGGTGTCGGCGATTCCGACCCCATGAAGCTCTCCCCGGTGGAGGCGCGGAAGATCATCGAGCGGTTCACCCCCGACCAGCTCATCGATATTCTCCAGGACGCCATCGTTCACCACTCTGACGTTCTCGCCGCCGTCCGTGCCGTCGCCGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGTGGACTCGGTTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCGCCTACGGTGACCTCGAGGAAGCTGTCGTGATCCTCGACAAGGCCACCGGAAAATCCAAGGGTTATGGCTTCGTCACCTTCCGCCACGTTGACGGTGCCCTCCTCGCCCTCCGTGACCCGAGCAAGCCCATCGATGGTCGGATCACCGTCACACAGCTCGCCGCGGCCGGGAATTCTGGCTCTAACGCCAATGCAGCCGACATCGCGCTCCGGAAGATTTACGTGGCTAATGTCCCACCAGATCTGCCGGCCGACAAACTCCTCGCTCACTTCTCCCTCTATGGTGAGATTGAAGAAGGCCCATTGGGCTTCGACAAGCAAACCGGAAAGTCCAAAGGGTTCGCTCTATTTGTCTATAAAACCCCTGAAGGTGCACAAGCTTCACTATTGGATCCTGTAAAGACAGTGGAAGGGAGGCAGTTAAATTGCAAGCTGGCACTAACAGATGGGAAACAAGGGAAGCGTGGGGGGACTGGTCCTGTTGGACAAGACGGGGTTCAGGGTCATGGAAATGTTGCTCATGGTCATCATCATGGTGATGGAATGGGGATGCCTCCTGCTGCAGCCGGTTCGGGACCCGGTTCACTTTCGGGTCAGTATGGTGGTCCGGTTGGTTTGGGTTCTTATGGTGGATTTGCTGGTGGGCTTCAGGGTCAGCCTCCGATGGGTAATCATCCTATGAATTCGTCGGTTGGTGGGTTGTCTTCAGTGGGGAATCAGGCTCCATCATCTATGGGTGGTGCCGGTTATGGACTGGGTGCTGTTTATGGGGGCTATGGCGGACCCGGGTCTACGGGTTTCGGTGGATTGGGTGGTGCTGGTGGTGCTGGTGCAGGTTTGGGAGGAGGTAATGCTGGTGCTGGTGGTGGTTCGGGTGCCGGTTTGGGTGGTACTGGTTCTTTATATAGGTTGCCGAGTTCAGGTGGATTGCAAGGTGGTGGGTATCCAGAGAGTGGACACTATAGTCTAACAGCTTCATCTGGGTACCAGAATCAGCATCATCCTCCTGCTGGGGCTTCACCTGTACCTAGGGTTCCACCTGGTTCAGTGTATCCAAATATGCCCCCTTACTACTGA 1356 0.5671 MAMDPTKKRKLDENGFGVGDSDPMKLSPVEARKIIERFTPDQLIDILQDAIVHHSDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALRDPSKPIDGRITVTQLAAAGNSGSNANAADIALRKIYVANVPPDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQASLLDPVKTVEGRQLNCKLALTDGKQGKRGGTGPVGQDGVQGHGNVAHGHHHGDGMGMPPAAAGSGPGSLSGQYGGPVGLGSYGGFAGGLQGQPPMGNHPMNSSVGGLSSVGNQAPSSMGGAGYGLGAVYGGYGGPGSTGFGGLGGAGGAGAGLGGGNAGAGGGSGAGLGGTGSLYRLPSSGGLQGGGYPESGHYSLTASSGYQNQHHPPAGASPVPRVPPGSVYPNMPPYY* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02038 451 PANTHER GEO13361P1-RELATED 55 330 - -
Rops3g02038 451 SMART rrm1_1 165 237 IPR000504 GO:0003723
Rops3g02038 451 SMART rrm1_1 73 145 IPR000504 GO:0003723
Rops3g02038 451 MobiDBLite consensus disorder prediction 432 451 - -
Rops3g02038 451 FunFam UBP1-associated protein 2C isoform A 55 158 - -
Rops3g02038 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 131 IPR000504 GO:0003723
Rops3g02038 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 222 IPR000504 GO:0003723
Rops3g02038 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 140 IPR000504 GO:0003723
Rops3g02038 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Rops3g02038 451 Gene3D - 53 155 IPR012677 -
Rops3g02038 451 MobiDBLite consensus disorder prediction 413 427 - -
Rops3g02038 451 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Rops3g02038 451 MobiDBLite consensus disorder prediction 401 451 - -
Rops3g02038 451 SUPERFAMILY RNA-binding domain, RBD 157 266 IPR035979 GO:0003676
Rops3g02038 451 Gene3D - 156 276 IPR012677 -
Rops3g02038 451 MobiDBLite consensus disorder prediction 240 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02038 Rops-Chr3 36886870 36890597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02038 160 277 C2H2 Transcription Factor Family AT2G19380 34.328 9.85e-11 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02038 3 36886870 36890597 Rops3g02038 3 36886870 36890597 ECH