Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02014 ATGGCGAAAACGAGGCCAGGCAAAAAGGACTTGGACTCGTACACCATCAGAGGCACCAACAAGGTCTTTAGAGCTGGAGACTGTGTTTTGATGCGGCCTGCGGATACTACGAAACCACCCTACGTGGCGCGTGTGGAGAAGATCGAGCAAGATAACAGGAACAACGTGAGGGTACGAGTGAGGTGGTATTATAGGCCTGAAGAGTCGATTGGGGGAAGGAGACAGTTCCATGGTGCTAAGGAGCTTTTTCTCTCTGACCATCATGATGTTCAGAGTGCTCACACCATTGAAGGAAAGTGTGTTGTTCACTCTTTTAAGAACTATACTAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGACCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGTATGGGCATGACTATCGAAGAAGCAAAGAAACTAGACCATTTTGTATGTTCCGAGTGTTCATCTGATGATGATATGAAGAAACCCCAAGTTACATTTTCTGCATCACCACGAGCTGATAGCAAGGTGGAGCCCAAGCGGCGGAAGAGAGGACCATAA 657 0.4734 MAKTRPGKKDLDSYTIRGTNKVFRAGDCVLMRPADTTKPPYVARVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHHDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKPQVTFSASPRADSKVEPKRRKRGP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02014 218 PANTHER OS08G0421900 PROTEIN 1 208 - -
Rops3g02014 218 Pfam PHD-finger 140 188 IPR019787 -
Rops3g02014 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Rops3g02014 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Rops3g02014 218 Gene3D - 2 134 IPR043151 -
Rops3g02014 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Rops3g02014 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Rops3g02014 218 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Rops3g02014 218 SMART PHD_3 140 187 IPR001965 -
Rops3g02014 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 199 IPR013083 -
Rops3g02014 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Rops3g02014 218 FunFam Chromatin remodeling protein EBS 1 132 - -
Rops3g02014 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Rops3g02014 218 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02014 Rops-Chr3 36208229 36213571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02014 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 1.74e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops3g02014 BAH 3.3e-23 No_clan