Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01891 ATGGACAACAACAACAGCAGTGTCCCTAGAATTCATGTGTCCCCACCACCACCTTCGCCTCCCATGTTTTCCTTCATTGCAGCTCTTGTCATTTCAATGCTAATCTTCATGTGTGTCTATGTTTTCTCAATCATCATTTCTGTGGCCATACTTCTCACCCTTTACATTACCAGCATGCTCTATTTCAGATTTATCCACAACGGTCCTGAATTGGATATTGGATTGAGAGAAAGAACCACTTTTTATGCCCAAACCCCACAAAGGGTGGTGAGAATTTCAGATAAGCTTTTCTGGGTTGTTGAGGAAAGAGGAAACCAAAGGTCACAAAGGTCAGTTAAGAAACTGTTAGGATCTGTTGTATGTTTTGGAAGCCAAGAAATGACATCAGGTAAAAGTGATTGTTGTGCTATTTGTTTGGAGGATTTCAAGAAAAGTGACGAATGTTTTGTTTTCCCAGTTTGTGGACATGCTTTTCATTTTCATTGTATCAATCATTGGCTTGAAAAGAAACCCAATTGCCCAATTTGTCGTCATTGTATTCCATCAACAGCCACCATGATCACAAAAACAGGAAACATGGAATTCATGGCGAATTTAGTTTAG 603 0.3947 MDNNNSSVPRIHVSPPPPSPPMFSFIAALVISMLIFMCVYVFSIIISVAILLTLYITSMLYFRFIHNGPELDIGLRERTTFYAQTPQRVVRISDKLFWVVEERGNQRSQRSVKKLLGSVVCFGSQEMTSGKSDCCAICLEDFKKSDECFVFPVCGHAFHFHCINHWLEKKPNCPICRHCIPSTATMITKTGNMEFMANLV* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01891 200 CDD RING-H2_PA-TM-RING 134 177 - -
Rops3g01891 200 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Rops3g01891 200 Pfam Ring finger domain 134 177 IPR001841 -
Rops3g01891 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 183 IPR013083 -
Rops3g01891 200 SUPERFAMILY RING/U-box 127 183 - -
Rops3g01891 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 39 182 - -
Rops3g01891 200 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01891 Rops-Chr3 33006039 33006641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01891 23 183 C3H Transcription Factor Family AT1G53010 28.571 1.36e-16 72.4