Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00791 ATGGATCCTCATTTCAAGTCCAATTTCATCAATGGCATTAAATTCAACCAAGTGGCCAACACACTCAATGTAGAGGATTATAGCTTTGGATTCATGGATAACCCGTTTCTTCTTCCACCTGATCCGAACAATGCTCAAAATCCTGCTTCCCTGTCCACCGTTACTATGGATGAGGACTCTCCCTTGGATGAGATTGATTTCTCTGCTACTGTCCTGCGCTACATAAACCAAATGCTTATGGAAGAGGACATGGAGGAGAAGCCCTGCATGTTCCATGATTCACTGGCTCTCCAAGCTGCTGAGAAATCTCTCTCTGTGGTCATTGGTGGGACATGCCCTTCTTCTTCCACCCAAAACTATCACAATATGGAGAGCCCTGATGACAGTCTCAGCAGTAACTTCAGTGTTTATAGCTGTTGCGGTGCAACTAGTACTGGCAACTCCATTGAATCCAACTGGAATAACGTTGATCTTACTGATTACAAGCCTTCTATACTGCAAACCACTTTTCCTGCTGACTTTGTTTTCCAGGCCAGTTCAACCTCCAGTTCTCAATCTTCTATGAACGGTACTAGCAGCTTTTCTGTAACCAATAGTGGATTATTGGCAAGTACCAGGGATGGATTTTCAGATTCAACCTTGCTTAGCCAGAGTGAGTCTGTACTACAATTTGAGAGGGGTATGGAAGAGGCCAGTAAGTTTCTTCCTAAAGGGAATCCATTGGTGGTTATTGACCTGGAGAACAGCTCCTTTATCCCTTCTATTAAAAAGGTTCCTCAGCAGGAGGTAATTAAGACAGAGGGAGATGAAAGGGAGCATTTTTCTGCTGAGTCAAGAGGAAGGAAGAATCATGAGCGGGAAGATGAGACAGATTTGCAAGATGGGAGAAGCAATAAGCAGTCAGCTATTTACAGGGAGGATAATGAACTATCAGAACTATTTGATAAGGTACTGCTGGGCACAGGTTGCAGAAATAAGGCAGCTTCTATGAGTAGTAAGGAAGACCAACCTAATGGACCAGACATGAGCGTGCAGCAGAAAGCAGAAACAAACAAGTCCAGTGGTGGAAAGAGCCGTGCTAAGAAACAAGGCAACAAAAAGGGAGTTGTGGATTTGAGGACCCTATTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGCAACTGCTAATGAGTATTTAAAGCAGATAAGGCAACATTCTTCCCCACCGGATGATGGGTCACAGAGGCTGGCTTATTGCTTTGCTAATGCCCTTGAAGCACGCTTGGCTGGCACTGGCACTCAGATTTATACTGCATTATCCTCCAAAAGAACCTCTTCTGCTGACATGGTGAAAGCTTACCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTTGCAATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTAGAAACTCTTCATATTGTAGATTTTGGCATCCGTTATGGCTTCCAGTGGCCTGCCCTTATTTATCGTTTGTCAAAAAGACCTGGTGGGCCTCCCAAGCTGCGCATGACAGGGATAGAGCTCCCGCAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTGGCTAGGTATTGTGATCGCTTTAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAACTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGCAGTAAATTGTATTTGTCGATTTAAAAATCTACTCGATGAGACAGTTGTGTTGAACAGTCCCAGGGATGCTGTTTTAAAGTTAATTAGGAAGGCAAATCCCGCTATCTTTATACATGCTACTGTCAATGGGAGCTATAATGCACCATTCTTTGTGACACGGTTCCGGGAGGCTCTCTTCCATTACTCCACATTGTTTGATGTGCTTGACACCAATGTTAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGGCGGGAGGTAATGAACATTGTAGCTTGTGAGGGCTCTGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTCGTAATATGAGGGCTGGATTTAAGCAACTGCCCTTGGATCAACATCTCATTAACAAATTAAGATGCAAGTTGAGAGATGTGTACCACAGTGATTTCATGCTTGATGAAGATGGCAACTGCATGCTGCAAGGTTGGAAGGGCCGAATAGTTTATGTTTCCTCCTGTTGGGTACCTGCATAG 2238 0.4388 MDPHFKSNFINGIKFNQVANTLNVEDYSFGFMDNPFLLPPDPNNAQNPASLSTVTMDEDSPLDEIDFSATVLRYINQMLMEEDMEEKPCMFHDSLALQAAEKSLSVVIGGTCPSSSTQNYHNMESPDDSLSSNFSVYSCCGATSTGNSIESNWNNVDLTDYKPSILQTTFPADFVFQASSTSSSQSSMNGTSSFSVTNSGLLASTRDGFSDSTLLSQSESVLQFERGMEEASKFLPKGNPLVVIDLENSSFIPSIKKVPQQEVIKTEGDEREHFSAESRGRKNHEREDETDLQDGRSNKQSAIYREDNELSELFDKVLLGTGCRNKAASMSSKEDQPNGPDMSVQQKAETNKSSGGKSRAKKQGNKKGVVDLRTLLILCAQAVSSDDRATANEYLKQIRQHSSPPDDGSQRLAYCFANALEARLAGTGTQIYTALSSKRTSSADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRMTGIELPQPGFRPAERVQETGLRLARYCDRFNVPFEFNAIAQKWETIKLEDLKIKKNELLAVNCICRFKNLLDETVVLNSPRDAVLKLIRKANPAIFIHATVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGREVMNIVACEGSERVERPETYKQWQVRNMRAGFKQLPLDQHLINKLRCKLRDVYHSDFMLDEDGNCMLQGWKGRIVYVSSCWVPA* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00791 745 ProSiteProfiles GRAS family profile. 363 743 IPR005202 -
Rops3g00791 745 Pfam GRAS domain family 372 742 IPR005202 -
Rops3g00791 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 297 736 IPR005202 -
Rops3g00791 745 MobiDBLite consensus disorder prediction 262 304 - -
Rops3g00791 745 MobiDBLite consensus disorder prediction 327 353 - -
Rops3g00791 745 MobiDBLite consensus disorder prediction 327 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00791 Rops-Chr3 9664305 9667739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00791 18 745 GRAS Transcription Factor Family AT1G07530 54.941 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00791 GRAS 5.9e-117 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00791 3 9664305 9667739 Rops3g00791 3 9664305 9667739 ECH
Rops11g03505 11 67075015 67077474 Rops3g00791 3 9664305 9667739 ECH
Rops7g00786 7 10605374 10607578 Rops3g00791 3 9664305 9667739 PCT