Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00510 ATGTCTACAGGCCAAGAAGAACTAGCAAAGGGATCAAAGTGTCAAGACTGTGGGAACCAAGCTAAGAAGGATTGTGCATACTCAAGGTGCAGATCTTGCTGCAAGAACAAAGGGTTTGAGTGCCAAACCCATATCAGAAGCACTTGGATTCCAGTGGATAGAAGACGCCAGAGAATAGAGCAGCTATCTCTCACTACTAATCCCCATCACTTTCAGGGAGCTATCTCTAAAAGGCACAGGCAGAACCCATATTCAAATATGGAGGAGTTCAAATTTCCAGCAATTGTGAGTTCCATGACAGCATTCAGCTGTGTTCAGGTGCGTTCTATGGATGACAAGGTTAATGAAATCGCATATCAAACATCCGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGCCCTGAACAAAGCTTCAATGTTAGGGGTGAGAGCTCCATAGACCCTCTTGATCAGCAACACAATCTCAATCTTTTTAGTGCTGCAATCCACACCCGTGATAGTGCAAGTGCAACTATGGCTCCACTATCAGCCACTGCTGCTCATGGATTTTCTTTTCCCCCTCCACTTCCTTTAGCTTCCTTCAGGCCCGCTAGGGCCTTCTTGGGGGACTTTATTGTTCAATCAGTTGATGGAACCTCTCTAGATCATAAGCAACATAAGAGAGACAAATTCATAGTCAATATAGGCTGA 705 0.4426 MSTGQEELAKGSKCQDCGNQAKKDCAYSRCRSCCKNKGFECQTHIRSTWIPVDRRRQRIEQLSLTTNPHHFQGAISKRHRQNPYSNMEEFKFPAIVSSMTAFSCVQVRSMDDKVNEIAYQTSVNIGGHVFSGLLYDQGPEQSFNVRGESSIDPLDQQHNLNLFSAAIHTRDSASATMAPLSATAAHGFSFPPPLPLASFRPARAFLGDFIVQSVDGTSLDHKQHKRDKFIVNIG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00510 234 NCBIfam putative zinc finger domain, LRP1 type 13 55 IPR006510 -
Rops3g00510 234 Pfam Domain of unknown function (DUF702) 11 140 - -
Rops3g00510 234 NCBIfam LRP1 C-terminal domain 91 139 IPR006511 -
Rops3g00510 234 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 178 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00510 Rops-Chr3 6493891 6495001 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops3g00510 DUF702 4.9e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00510 3 6493891 6495001 Rops3g00510 3 6493891 6495001 ECH
Rops3g00510 3 6493891 6495001 Rops1g01604 1 34232711 34235045 ECH
Rops10g02627 10 45509388 45510326 Rops3g00510 3 6493891 6495001 ECH
Rops10g02431 10 42540016 42541421 Rops3g00510 3 6493891 6495001 ECH
Rops3g00510 3 6493891 6495001 Rops10g02627 10 45509388 45510326 ECH