Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04491 ATGGCTCTTAGAGAAGAAACCCAGGATGCCCAACACCACTCTCCTTCATTCCTTGACACCCTCCTCTGTGAAGAGCAAGATACCTTTGAAGAAGATTTTGATGCAAATGGTTCTGAGTTTGAGACCAATAACAATGACCCATCTGTGAGAAAGTTGCAATCTTTGCCCTTGATTTTGCTGGACAATGACTTGTTCTGGGAAGATGATGAACTTGTTTCCTTAATCTCAAAAGAGGGAGAGACCCATTTGTGTTCTCATAATCTCATTGCTGATGGATCCTTAGAAGGGCCTCGTGTTGAGGCTGTGAGCTGGATTTCTAAAGTTTGTGCACATTATGGTTTCTCTGCTTTGACCACTGTTCTTGCTGTGAACTACTTTGATAGGTTCATCACAAGTCTGATGTTTCAAAGGGATAAGCCATGGATGACACAGCTCACTGCGGTTGCCTGTTTGTCTCTGGCTGCAAAAATGGAAGAGACCCATGTGCCACTTCTTTTAGACCTCCAAGTGGAGGAAACAAGGTTTGCGTTTGAAGCAAAAACTATACAGAGAATGGAGCTTTTAGTGTTGTCAACTCTTAAATGGAGGATGCATCCTGTGACCCCAATTTCCTTCTTTGAACATGTTGTCAGAAGGCTTGGTTTAAAGAGCCGCTTGCATTGGGAGTTCCTATGGCGTTGTGAGCGAGTTCTTATCAATGTCATTGTGGATTCAAGGGTTATGAGTCATCTTCCTTCTACATTGGCTGCCGCTACAATGATCCATGTTATTAAAGAGATTGAACCATTTAATGCATCTGAGTATATTAATCAGCTTATGGGTTTACTAAAGATTAGTGAGGAACAAGTGAACCAGTGCTACAAACTCATACTGAAACTATTAGTTTGCTATGAAGGCATTTACAATCTCCACCAGAAGCGCAAGCGCCTATCTGAACCAAGTAGCCCAGGTGGTGTCATTGACGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGATCGTGGCATCATCTGTGCCACTTTCACTAGAGCCACTGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGATTGCCTTCCATTAATCGCGTGTCCATTGATGTTCTTAATAGCCCTCGTTAA 1125 0.4293 MALREETQDAQHHSPSFLDTLLCEEQDTFEEDFDANGSEFETNNNDPSVRKLQSLPLILLDNDLFWEDDELVSLISKEGETHLCSHNLIADGSLEGPRVEAVSWISKVCAHYGFSALTTVLAVNYFDRFITSLMFQRDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEETRFAFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHVVRRLGLKSRLHWEFLWRCERVLINVIVDSRVMSHLPSTLAAATMIHVIKEIEPFNASEYINQLMGLLKISEEQVNQCYKLILKLLVCYEGIYNLHQKRKRLSEPSSPGGVIDASFSCDSSNDSWIVASSVPLSLEPLFKRSRAQDQQMRLPSINRVSIDVLNSPR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04491 374 PANTHER CYCLINS 73 294 IPR039361 -
Rops2g04491 374 CDD CYCLIN_AtCycD-like_rpt2 200 290 - -
Rops2g04491 374 Gene3D - 97 198 - -
Rops2g04491 374 FunFam CYCLIN D32 199 288 - -
Rops2g04491 374 SUPERFAMILY Cyclin-like 65 198 IPR036915 -
Rops2g04491 374 Gene3D - 199 288 - -
Rops2g04491 374 FunFam D3-type cyclin 91 198 - -
Rops2g04491 374 Pfam Cyclin, C-terminal domain 200 297 IPR004367 -
Rops2g04491 374 SMART Cyclin_C_2 200 328 IPR004367 -
Rops2g04491 374 SUPERFAMILY Cyclin-like 201 300 IPR036915 -
Rops2g04491 374 SMART cyclin_7 103 191 IPR013763 -
Rops2g04491 374 CDD CYCLIN_AtCycD-like_rpt1 98 195 - -
Rops2g04491 374 Pfam Cyclin, N-terminal domain 96 197 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04491 Rops-Chr2 82095073 82096888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04491 1 364 Core Cell Cycle Gene Families AT5G67260 52.957 1.37e-119 350
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01818 1 37415035 37416545 Rops2g04491 2 82095073 82096888 ECH
Rops10g01122 10 23274087 23276015 Rops2g04491 2 82095073 82096888 ECH
Rops9g02182 9 39938520 39940150 Rops2g04491 2 82095073 82096888 ECH
Rops2g04491 2 82095073 82096888 Rops2g04491 2 82095073 82096888 ECH
Rops2g04491 2 82095073 82096888 Rops1g01818 1 37415035 37416545 PCT