Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04486 ATGGTGGATCGGATCAAGGGCCCATGGAGCCCCGAAGAAGATGAGGCACTGCAGAAGCTGGTGGAGAGGCATGGGCCCAGGAATTGGTCGCTGATAAGCAGGTCAATTCCGGGTAGGTCAGGGAAGTCATGCAGGCTCCGATGGTGTAACCAACTGTCCCCTCAGGTGGAGCACCGGGCCTTCACGTCAGAAGAGGACGAAACTATTATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCCACAATAGCCCGTCTCCTCTCCGGTCGAACCGATAACGCTATCAAGAACCACTGGAACTCCACCCTCAAGCGCAAGTGCGCCTCCATCATGTCCACCGACGATCTCGCCGCCGGTGGTTTCAGCCCACAGCCTCTCAAGAGGTCGGCCAGTGCCGGTGCTCCGGGGAGTCCTTCCGGCTCCGACGTTAGCGATTCCAGCCTTCCCGCCGTCTTGTCTCCCTCGCACATGTTCCGGCCCATGCCGGTTCGACCGCACGTGGAAACGACGTCGTCGCGCGAGGATGACGACGGCCCTCCCACTTCGTTGTCACTTTCTCTTCCCGGCGTTGACTCCTCTGAAGTCTCAAATCGGGCGGCGACTGTGGTTCCGACAATTCCTGCTCCGATAACCGCCATACCAGCTCAGGCTCCGGTGGTGGCGCAACTGCCACAGGAGGCTGGGTTGGGACCGTTTAATTTCAGTGCGGAGTTGATGGCGGTGATGCATGAGATGATAAAAAATGAGGTGAGGAGTTACATGGAGCAACAAAATGGGATGTGTTTTCAGACTGTTAATGGGTTCAGGAACGTGTCGGTGAATCGAATTGGGTTTAGCAGGGTCGATTCCTAA 852 0.5751 MVDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTSEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMSTDDLAAGGFSPQPLKRSASAGAPGSPSGSDVSDSSLPAVLSPSHMFRPMPVRPHVETTSSREDDDGPPTSLSLSLPGVDSSEVSNRAATVVPTIPAPITAIPAQAPVVAQLPQEAGLGPFNFSAELMAVMHEMIKNEVRSYMEQQNGMCFQTVNGFRNVSVNRIGFSRVDS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04486 283 Pfam Myb-like DNA-binding domain 60 102 IPR001005 -
Rops2g04486 283 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Rops2g04486 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Rops2g04486 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Rops2g04486 283 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Rops2g04486 283 FunFam MYB transcription factor 6 57 - -
Rops2g04486 283 SUPERFAMILY Homeodomain-like 3 99 IPR009057 -
Rops2g04486 283 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Rops2g04486 283 PANTHER MYB PROTEIN-RELATED 6 164 - -
Rops2g04486 283 CDD SANT 60 103 IPR001005 -
Rops2g04486 283 MobiDBLite consensus disorder prediction 134 151 - -
Rops2g04486 283 MobiDBLite consensus disorder prediction 121 194 - -
Rops2g04486 283 Gene3D - 5 57 - -
Rops2g04486 283 SMART sant 5 54 IPR001005 -
Rops2g04486 283 SMART sant 57 105 IPR001005 -
Rops2g04486 283 Gene3D - 59 118 - -
Rops2g04486 283 CDD SANT 8 50 IPR001005 -
Rops2g04486 283 FunFam Transcription factor MYB44 60 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04486 Rops-Chr2 82014954 82016213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04486 2 282 MYB Transcription Factor Family AT4G37260 52.188 1.12e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04486 Myb_DNA-binding 5.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01824 1 37461089 37462581 Rops2g04486 2 82014954 82016213 ECH
Rops10g00999 10 21460005 21461312 Rops2g04486 2 82014954 82016213 ECH
Rops9g02179 9 39862056 39863217 Rops2g04486 2 82014954 82016213 ECH
Rops2g04486 2 82014954 82016213 Rops2g04486 2 82014954 82016213 ECH
Rops2g04486 2 82014954 82016213 Rops1g01824 1 37461089 37462581 PCT