Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02560 ATGTCAGATGTTAAAGACCCGGTGATGAAGCTTTTTGGGAAGACAATTTCGCTGCCACTCATCCCCAGTGACTCTTCTGCTTCACCTGCACCTTTCACTCGTTCTTCATCTAACTCTTCTGCAACAGAACACGAAGCAGAGGAACCACAAAGGAAAGAACTCACCTTAGTACAAGATGATGATGCCTCACAACAAACCACAGAGGATTTAAAATCTCCAACAACATCTTCAGGCATATTTGAGAATCCCAAGACTCCTTCAGGTGAAACTGAGACTTCATTACTGAAATCCTCTACAAATGGAGAACAAAGTGAGACAAGTGTTTCTGAAGAAAAAACTCCGAAGAAACCCGACAAGATACTTCCATGCCCGCGATGCAATAGCATGGACACCAAATTCTGTTATTATAACAATTACAATGTCAATCAGCCTCGCCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCTGGAGGAACAATGAGAAATGTGCCTGTAGGTGCTGGTCGCCGCAAGAACAAGAACTCTTCTGCCTCACATTATCGTCACATGATGGTTCCTGAGGCACTTCAAGCAGCTAAACTCAATGCCTTCAATGGATTACATAATGCTGTTCTGGGAAATGGAGCAGCAGTCTTGACCTTTGGTTCAGATTCTCCCCTTTGTGATACCATGAATTCTGTATTGAGCATTGCTGAGAGAACACAAAATTGTGTTCCAAATGGGTTTCATGCAAATGAGCTGAATACTTTTGCTTCCAATGGTAGTGAAGATGATCACTCTATTGGAGTTTCTGGTACAACTTCAACTTCACATGAATCAGTGGATAGAAGAGTTGAAGGTTTCCCTCCTCAATTGCAGTGCTTCCCAAGTTCCTCTTGGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTGCATTTTGCCCTCTTAACTATCCTTTATCATTGTATGCCACACCTGCATATTGGAGTTCTATGCCACCATCCTGGAATATATCATGTATCTCACCCCAATCTTCTGTTAACCACTCTGCCTGTACCACTAGTTCTGGCCCCAATTCACCTATTTTGGGGAAGCACTCAAGGGATGGGAACATCATCTACCCTGTCAACTCACATAAAGAAAAGCCTGGTATAGAACATAACAATTCAGAGAACAGCTCCTTGATCCCCAAGACTCTTAGAATTGATGACTCTAGTGAAACTGCAAATAGTTCCATATGGTCAAAACTAGGAATCAAGAATGACCAGGCCAATTCTCTCAATGGAGGAGGCCTTTTCCAAGCATTTCCATCCAAGAGAAGTGACAAGAATCACTTGGTTGAAGCATCACCAGTGTTGCATGCCAACCCTGCAGCTTTATCGCGGTCTCTTACCTTCCATGAGAGGACCTAA 1395 0.4323 MSDVKDPVMKLFGKTISLPLIPSDSSASPAPFTRSSSNSSATEHEAEEPQRKELTLVQDDDASQQTTEDLKSPTTSSGIFENPKTPSGETETSLLKSSTNGEQSETSVSEEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASHYRHMMVPEALQAAKLNAFNGLHNAVLGNGAAVLTFGSDSPLCDTMNSVLSIAERTQNCVPNGFHANELNTFASNGSEDDHSIGVSGTTSTSHESVDRRVEGFPPQLQCFPSSSWPYPWNSAMPPPAFCPLNYPLSLYATPAYWSSMPPSWNISCISPQSSVNHSACTTSSGPNSPILGKHSRDGNIIYPVNSHKEKPGIEHNNSENSSLIPKTLRIDDSSETANSSIWSKLGIKNDQANSLNGGGLFQAFPSKRSDKNHLVEASPVLHANPAALSRSLTFHERT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02560 464 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Rops2g02560 464 MobiDBLite consensus disorder prediction 59 107 - -
Rops2g02560 464 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Rops2g02560 464 PANTHER CYCLIC DOF FACTOR 2 3 464 IPR045174 GO:0003700|GO:0006355
Rops2g02560 464 MobiDBLite consensus disorder prediction 257 272 - -
Rops2g02560 464 MobiDBLite consensus disorder prediction 44 58 - -
Rops2g02560 464 MobiDBLite consensus disorder prediction 15 119 - -
Rops2g02560 464 MobiDBLite consensus disorder prediction 19 43 - -
Rops2g02560 464 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Rops2g02560 464 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02560 Rops-Chr2 42076545 42081111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02560 4 462 C2C2-Dof Transcription Factor Family AT5G39660 40.945 1.21e-89 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops2g02560 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02560 - - gmx:100813315 642.884